miRNA display CGI


Results 21 - 40 of 767 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 5' -67 NC_001847.1 + 2298 0.72 0.144226
Target:  5'- gCGgGGCCgCCGGGCGGcauGgGCCcCAGCAc -3'
miRNA:   3'- -GCgCCGG-GGCCCGUC---CgCGGuGUCGU- -5'
6380 5' -67 NC_001847.1 + 2559 0.68 0.290046
Target:  5'- gGCGGgcuguCUUCGGcGCGGGCGCCugcGCGGCc -3'
miRNA:   3'- gCGCC-----GGGGCC-CGUCCGCGG---UGUCGu -5'
6380 5' -67 NC_001847.1 + 2762 0.72 0.147766
Target:  5'- gGCGGCgCCGGcGCcGGCGCCcccgcCGGCGg -3'
miRNA:   3'- gCGCCGgGGCC-CGuCCGCGGu----GUCGU- -5'
6380 5' -67 NC_001847.1 + 2991 0.7 0.196805
Target:  5'- uCGCGGCCCCacccugcgcGGCAGcaGCGCCGCccaauaggGGCGg -3'
miRNA:   3'- -GCGCCGGGGc--------CCGUC--CGCGGUG--------UCGU- -5'
6380 5' -67 NC_001847.1 + 3046 0.69 0.253104
Target:  5'- gGCGGCCcggagcacgcgcuCCGGGU--GCGCCGcCAGCGc -3'
miRNA:   3'- gCGCCGG-------------GGCCCGucCGCGGU-GUCGU- -5'
6380 5' -67 NC_001847.1 + 3123 0.71 0.1873
Target:  5'- cCGCGGCCgagagcaCCGGGagcccggcGGCGCCgGCGGCGc -3'
miRNA:   3'- -GCGCCGG-------GGCCCgu------CCGCGG-UGUCGU- -5'
6380 5' -67 NC_001847.1 + 3179 0.71 0.166683
Target:  5'- aGC-GCCUCGcGGCAGGCGacggCGCAGCGg -3'
miRNA:   3'- gCGcCGGGGC-CCGUCCGCg---GUGUCGU- -5'
6380 5' -67 NC_001847.1 + 3257 0.68 0.296491
Target:  5'- gGCGGCag-GGGCGccGGCGCCGC-GCGg -3'
miRNA:   3'- gCGCCGgggCCCGU--CCGCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 3298 0.67 0.344712
Target:  5'- gCGCaGCUCggcgagcgCGGcGCGGGCGCCGCuGCc -3'
miRNA:   3'- -GCGcCGGG--------GCC-CGUCCGCGGUGuCGu -5'
6380 5' -67 NC_001847.1 + 3338 0.68 0.270766
Target:  5'- gCGcCGGCCuCCGGGUAGGCcaugggggcguacGCgCGCcGCAg -3'
miRNA:   3'- -GC-GCCGG-GGCCCGUCCG-------------CG-GUGuCGU- -5'
6380 5' -67 NC_001847.1 + 3420 0.69 0.253677
Target:  5'- gGCGGCUCaUGGccacGCAGGcCGCCACGuGCGg -3'
miRNA:   3'- gCGCCGGG-GCC----CGUCC-GCGGUGU-CGU- -5'
6380 5' -67 NC_001847.1 + 3537 0.75 0.089986
Target:  5'- uGUGGCCCCGGcagcccuGCAcGCGCCGCuGCAg -3'
miRNA:   3'- gCGCCGGGGCC-------CGUcCGCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 3717 0.66 0.359486
Target:  5'- cCGCGGCCgCCGcGUAGcGCGCgGCcGCc -3'
miRNA:   3'- -GCGCCGG-GGCcCGUC-CGCGgUGuCGu -5'
6380 5' -67 NC_001847.1 + 3821 0.69 0.25196
Target:  5'- gGCGGCgcgcugCCGGGCcacgccucgccagaAGGCGUCAgCAGCGg -3'
miRNA:   3'- gCGCCGg-----GGCCCG--------------UCCGCGGU-GUCGU- -5'
6380 5' -67 NC_001847.1 + 3881 0.75 0.092498
Target:  5'- gGCGGCCCguCGcGC-GGCGCCGCGGCGu -3'
miRNA:   3'- gCGCCGGG--GCcCGuCCGCGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 3914 0.73 0.12766
Target:  5'- gCGCGGgCgCCGGuugcgcgcccgcGCuGGCGCCGCGGCGg -3'
miRNA:   3'- -GCGCCgG-GGCC------------CGuCCGCGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 3997 0.74 0.112869
Target:  5'- gCGCGGCCCCGcGG--GGCGCCGggccCGGCGc -3'
miRNA:   3'- -GCGCCGGGGC-CCguCCGCGGU----GUCGU- -5'
6380 5' -67 NC_001847.1 + 4188 0.67 0.330379
Target:  5'- cCGCGcGCCCgUGGGCcGcGCGCagGCAGCc -3'
miRNA:   3'- -GCGC-CGGG-GCCCGuC-CGCGg-UGUCGu -5'
6380 5' -67 NC_001847.1 + 4279 0.66 0.374697
Target:  5'- gGCGGCCaCGaGGCGcgcgccGGCGCCuuGGUAc -3'
miRNA:   3'- gCGCCGGgGC-CCGU------CCGCGGugUCGU- -5'
6380 5' -67 NC_001847.1 + 4361 0.66 0.366277
Target:  5'- cCGCGGCCgccuccaccgcgaCCGcGaGCGcGcGCGCCGCGGCc -3'
miRNA:   3'- -GCGCCGG-------------GGC-C-CGU-C-CGCGGUGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.