miRNA display CGI


Results 1 - 20 of 767 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 5' -67 NC_001847.1 + 76 0.67 0.343985
Target:  5'- gGCGGgCCCGGGCccgcucuGGGCuCCGCcccuggguccGGCGc -3'
miRNA:   3'- gCGCCgGGGCCCG-------UCCGcGGUG----------UCGU- -5'
6380 5' -67 NC_001847.1 + 138 0.7 0.226305
Target:  5'- cCGCgGGCCUCGGGCcccggccgGGGgGCCGgGGUu -3'
miRNA:   3'- -GCG-CCGGGGCCCG--------UCCgCGGUgUCGu -5'
6380 5' -67 NC_001847.1 + 415 0.75 0.099693
Target:  5'- cCGagGGCCCgGGGCGGGCggGCgGCGGCGg -3'
miRNA:   3'- -GCg-CCGGGgCCCGUCCG--CGgUGUCGU- -5'
6380 5' -67 NC_001847.1 + 745 0.69 0.259467
Target:  5'- cCGCgGGCCCCccuaGGGCgAGGCcggcccGCCGcCGGCGg -3'
miRNA:   3'- -GCG-CCGGGG----CCCG-UCCG------CGGU-GUCGU- -5'
6380 5' -67 NC_001847.1 + 881 0.69 0.259467
Target:  5'- gGCGGCggCCCGcGCcgGGGcCGCCGCGGCc -3'
miRNA:   3'- gCGCCG--GGGCcCG--UCC-GCGGUGUCGu -5'
6380 5' -67 NC_001847.1 + 966 0.7 0.226305
Target:  5'- aCGCuGCgCCGGGCGucuaugcgccGGC-CCGCAGCAc -3'
miRNA:   3'- -GCGcCGgGGCCCGU----------CCGcGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 966 0.75 0.085798
Target:  5'- gCGcCGGCaCCCGGGCcGGCggggcuuccGCCGCGGCGg -3'
miRNA:   3'- -GC-GCCG-GGGCCCGuCCG---------CGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 1021 0.71 0.170718
Target:  5'- --aGGCCgCCGcccGCGGcGCGCCGCAGCAg -3'
miRNA:   3'- gcgCCGG-GGCc--CGUC-CGCGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 1100 0.83 0.025096
Target:  5'- cCGCGGCCgCGGGC-GGCGCCGCcGCGg -3'
miRNA:   3'- -GCGCCGGgGCCCGuCCGCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 1155 0.72 0.155087
Target:  5'- gCGCGGCUCC-GGCAGcGCGgCCGC-GCAg -3'
miRNA:   3'- -GCGCCGGGGcCCGUC-CGC-GGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 1225 0.67 0.33749
Target:  5'- aGCGcGCgCCGcccGCAGGCcagguacaccgGCCGCAGCGg -3'
miRNA:   3'- gCGC-CGgGGCc--CGUCCG-----------CGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 1419 0.66 0.367037
Target:  5'- aCGCGGCCCCGcGCcc-CGCCA-GGCAc -3'
miRNA:   3'- -GCGCCGGGGCcCGuccGCGGUgUCGU- -5'
6380 5' -67 NC_001847.1 + 1448 0.67 0.309713
Target:  5'- gCGUGGCCaCCGuGUAGcGCacguugccGCCGCGGCAg -3'
miRNA:   3'- -GCGCCGG-GGCcCGUC-CG--------CGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 1524 0.71 0.187744
Target:  5'- gGCGGCCUCGGcGCgcgcgaAGGCGCC-CGGg- -3'
miRNA:   3'- gCGCCGGGGCC-CG------UCCGCGGuGUCgu -5'
6380 5' -67 NC_001847.1 + 1591 0.69 0.236399
Target:  5'- aGCGcGCCgCuCGGGcCAGcgcgcggcgcacuGCGCCGCGGCAg -3'
miRNA:   3'- gCGC-CGG-G-GCCC-GUC-------------CGCGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 1936 0.7 0.22114
Target:  5'- gGCGGCCaCuCGGGCcgccGGCGCUcguccucgccggGCGGCGc -3'
miRNA:   3'- gCGCCGG-G-GCCCGu---CCGCGG------------UGUCGU- -5'
6380 5' -67 NC_001847.1 + 2082 0.68 0.283712
Target:  5'- gGCGagcGCCCCgcgGGGCccGCGCgGCGGCGg -3'
miRNA:   3'- gCGC---CGGGG---CCCGucCGCGgUGUCGU- -5'
6380 5' -67 NC_001847.1 + 2130 0.69 0.25598
Target:  5'- aGC-GCCUCGGGgucgaaggcgagcgcCGGGCGCCAgGGCu -3'
miRNA:   3'- gCGcCGGGGCCC---------------GUCCGCGGUgUCGu -5'
6380 5' -67 NC_001847.1 + 2200 0.7 0.210621
Target:  5'- cCGCGaCCUCgGGGCGGcaguaggccgccaGCGCCGCGGCGc -3'
miRNA:   3'- -GCGCcGGGG-CCCGUC-------------CGCGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 2245 0.68 0.303046
Target:  5'- gCGCGGgcgugugguaguCCCCGGGC-GGCa-CGCGGCGg -3'
miRNA:   3'- -GCGCC------------GGGGCCCGuCCGcgGUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.