miRNA display CGI


Results 1 - 20 of 767 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 5' -67 NC_001847.1 + 134263 0.84 0.018373
Target:  5'- gGCGGCCCCGGcGCGGGcCGCCGCcGCGc -3'
miRNA:   3'- gCGCCGGGGCC-CGUCC-GCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 35458 0.75 0.085798
Target:  5'- aCGCGGCCgCGGcGCgagAGGCGCUagagGCGGCAa -3'
miRNA:   3'- -GCGCCGGgGCC-CG---UCCGCGG----UGUCGU- -5'
6380 5' -67 NC_001847.1 + 69349 0.75 0.092498
Target:  5'- gGCGGCgCUGGuGCuGGCGCgCGCGGCGg -3'
miRNA:   3'- gCGCCGgGGCC-CGuCCGCG-GUGUCGU- -5'
6380 5' -67 NC_001847.1 + 45858 0.66 0.398316
Target:  5'- cCGaGGCCUCGGccGCGGcGCGCgaaACAGCGu -3'
miRNA:   3'- -GCgCCGGGGCC--CGUC-CGCGg--UGUCGU- -5'
6380 5' -67 NC_001847.1 + 103913 0.83 0.025096
Target:  5'- cCGCGGCCgCGGGC-GGCGCCGCcGCGg -3'
miRNA:   3'- -GCGCCGGgGCCCGuCCGCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 131120 0.82 0.027838
Target:  5'- aGCGGCCCCGcgagaGGCGGGCGCCGggccCGGCGc -3'
miRNA:   3'- gCGCCGGGGC-----CCGUCCGCGGU----GUCGU- -5'
6380 5' -67 NC_001847.1 + 54392 0.8 0.036992
Target:  5'- gGCGGCCgCGGGCgaggcGGGCGCCGCcGCGg -3'
miRNA:   3'- gCGCCGGgGCCCG-----UCCGCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 28729 0.8 0.04317
Target:  5'- gCGCGGCCgCGGGCAGcGuCGCCGCGcGCGu -3'
miRNA:   3'- -GCGCCGGgGCCCGUC-C-GCGGUGU-CGU- -5'
6380 5' -67 NC_001847.1 + 134878 0.77 0.063351
Target:  5'- gGCGGcCCCCGGGCucGGGCcCCugGGCGc -3'
miRNA:   3'- gCGCC-GGGGCCCG--UCCGcGGugUCGU- -5'
6380 5' -67 NC_001847.1 + 30497 0.76 0.083669
Target:  5'- gCGCGGCCCuCGGGCGcGCGCUagacgACAGUg -3'
miRNA:   3'- -GCGCCGGG-GCCCGUcCGCGG-----UGUCGu -5'
6380 5' -67 NC_001847.1 + 129468 0.76 0.07758
Target:  5'- gGCGGCCCCGGcCGGcccaccuucGCGCCugGGCGg -3'
miRNA:   3'- gCGCCGGGGCCcGUC---------CGCGGugUCGU- -5'
6380 5' -67 NC_001847.1 + 33669 0.77 0.06271
Target:  5'- cCGCGGCCCgcgcggggcuagaGGcGCAGGCGCuCGCGGCGc -3'
miRNA:   3'- -GCGCCGGGg------------CC-CGUCCGCG-GUGUCGU- -5'
6380 5' -67 NC_001847.1 + 36378 0.84 0.018373
Target:  5'- cCGCGG-CCCGGGCAGcgcGCGCCGCGGCGa -3'
miRNA:   3'- -GCGCCgGGGCCCGUC---CGCGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 45497 0.76 0.079561
Target:  5'- aGCaaacGCCCgGGGCGGGCGCCGCcGCc -3'
miRNA:   3'- gCGc---CGGGgCCCGUCCGCGGUGuCGu -5'
6380 5' -67 NC_001847.1 + 62496 0.84 0.019354
Target:  5'- gGCGGCCgCGGGguGGCgGCCACAGCc -3'
miRNA:   3'- gCGCCGGgGCCCguCCG-CGGUGUCGu -5'
6380 5' -67 NC_001847.1 + 18737 0.78 0.060208
Target:  5'- gCGCGGCCCgGGGCccAGaGCGCCGCcGCc -3'
miRNA:   3'- -GCGCCGGGgCCCG--UC-CGCGGUGuCGu -5'
6380 5' -67 NC_001847.1 + 70908 0.76 0.079561
Target:  5'- uCGCGGCaCUCGGGCAGcuucGCGCCGCcGCc -3'
miRNA:   3'- -GCGCCG-GGGCCCGUC----CGCGGUGuCGu -5'
6380 5' -67 NC_001847.1 + 106350 0.75 0.089986
Target:  5'- uGUGGCCCCGGcagcccuGCAcGCGCCGCuGCAg -3'
miRNA:   3'- gCGCCGGGGCC-------CGUcCGCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 88815 0.83 0.023642
Target:  5'- aCGCGGCCCgCGGGCGgccgugcugcgcucGGCGCUACGGCu -3'
miRNA:   3'- -GCGCCGGG-GCCCGU--------------CCGCGGUGUCGu -5'
6380 5' -67 NC_001847.1 + 31928 0.81 0.034862
Target:  5'- cCGCGGCUCCGcGGCGGGUaagcggacgagccuGCCGCGGCGg -3'
miRNA:   3'- -GCGCCGGGGC-CCGUCCG--------------CGGUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.