miRNA display CGI


Results 1 - 20 of 767 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 5' -67 NC_001847.1 + 107288 0.65 0.403154
Target:  5'- gCGCGGCCCacaGGGCccgcacgGGGUcuccgcucaugucaGCCGC-GCGu -3'
miRNA:   3'- -GCGCCGGGg--CCCG-------UCCG--------------CGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 130176 0.66 0.390338
Target:  5'- aGCGaCCCC--GCGGGCGCC-CGGCc -3'
miRNA:   3'- gCGCcGGGGccCGUCCGCGGuGUCGu -5'
6380 5' -67 NC_001847.1 + 101472 0.66 0.390338
Target:  5'- uGCGccucuaGCCCCGcGCGGGCcgcgGCCACGcGCGc -3'
miRNA:   3'- gCGC------CGGGGCcCGUCCG----CGGUGU-CGU- -5'
6380 5' -67 NC_001847.1 + 77388 0.66 0.390338
Target:  5'- aGCaGCCCCGuGGcCAGcGCGCCgaACGGg- -3'
miRNA:   3'- gCGcCGGGGC-CC-GUC-CGCGG--UGUCgu -5'
6380 5' -67 NC_001847.1 + 58210 0.66 0.390338
Target:  5'- gGC-GCUCCGGGCGGaucugccCGCCggGCGGCAg -3'
miRNA:   3'- gCGcCGGGGCCCGUCc------GCGG--UGUCGU- -5'
6380 5' -67 NC_001847.1 + 57994 0.66 0.390338
Target:  5'- gCGCGGUggCGGcGCAGGCGgCgGCGGUc -3'
miRNA:   3'- -GCGCCGggGCC-CGUCCGC-GgUGUCGu -5'
6380 5' -67 NC_001847.1 + 34454 0.66 0.384815
Target:  5'- aGUGGCCgCCuGGGUgcgagaaagccuccuGGGgacccccCGCCGCAGCAn -3'
miRNA:   3'- gCGCCGG-GG-CCCG---------------UCC-------GCGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 115107 0.66 0.382464
Target:  5'- cCGC-GCCCaGGGC-GGCGgCCGCAGg- -3'
miRNA:   3'- -GCGcCGGGgCCCGuCCGC-GGUGUCgu -5'
6380 5' -67 NC_001847.1 + 7379 0.66 0.382464
Target:  5'- uGC-GCCaccugCCGGGCAaGcCGCCGCAGCu -3'
miRNA:   3'- gCGcCGG-----GGCCCGUcC-GCGGUGUCGu -5'
6380 5' -67 NC_001847.1 + 74277 0.66 0.390338
Target:  5'- gCGCGGCCgcccucgcgCUGGacGCccuGGCGCCgcGCAGCGc -3'
miRNA:   3'- -GCGCCGG---------GGCC--CGu--CCGCGG--UGUCGU- -5'
6380 5' -67 NC_001847.1 + 86648 0.66 0.390338
Target:  5'- cCGCGccGCCCCGGaGC--GCGCCGC-GCu -3'
miRNA:   3'- -GCGC--CGGGGCC-CGucCGCGGUGuCGu -5'
6380 5' -67 NC_001847.1 + 28450 0.66 0.390338
Target:  5'- cCGCGGCgCCGcGcGaCGGGcCGCCGCcGCu -3'
miRNA:   3'- -GCGCCGgGGC-C-C-GUCC-GCGGUGuCGu -5'
6380 5' -67 NC_001847.1 + 45858 0.66 0.398316
Target:  5'- cCGaGGCCUCGGccGCGGcGCGCgaaACAGCGu -3'
miRNA:   3'- -GCgCCGGGGCC--CGUC-CGCGg--UGUCGU- -5'
6380 5' -67 NC_001847.1 + 61325 0.66 0.398316
Target:  5'- gCGCGGggCgGGGCGGGCGCgCcUAGCc -3'
miRNA:   3'- -GCGCCggGgCCCGUCCGCG-GuGUCGu -5'
6380 5' -67 NC_001847.1 + 58493 0.66 0.398316
Target:  5'- gGCGcccuccccGCCCuCGGGCAGG-GCgACGGgCAg -3'
miRNA:   3'- gCGC--------CGGG-GCCCGUCCgCGgUGUC-GU- -5'
6380 5' -67 NC_001847.1 + 51223 0.66 0.398316
Target:  5'- aGCgGGCCCUGcucGCGGGCgcGCCGCuGCc -3'
miRNA:   3'- gCG-CCGGGGCc--CGUCCG--CGGUGuCGu -5'
6380 5' -67 NC_001847.1 + 88386 0.66 0.397514
Target:  5'- -cCGGCCCCgcgcggcGGGCGGGCgcGCCGuCGGg- -3'
miRNA:   3'- gcGCCGGGG-------CCCGUCCG--CGGU-GUCgu -5'
6380 5' -67 NC_001847.1 + 60971 0.66 0.397514
Target:  5'- gCGCGGCa-UGGGCcccacgccgagAGGCGCCGCcaucauucgccccGGCGc -3'
miRNA:   3'- -GCGCCGggGCCCG-----------UCCGCGGUG-------------UCGU- -5'
6380 5' -67 NC_001847.1 + 75795 0.66 0.393517
Target:  5'- cCGCcGCCgcuccgcccccgaugCCGGGCugguacGGCGCCGcCGGCGc -3'
miRNA:   3'- -GCGcCGG---------------GGCCCGu-----CCGCGGU-GUCGU- -5'
6380 5' -67 NC_001847.1 + 76420 0.66 0.390338
Target:  5'- cCGcCGGaggagCCCGGGguGGCcGCgACGGUg -3'
miRNA:   3'- -GC-GCCg----GGGCCCguCCG-CGgUGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.