miRNA display CGI


Results 1 - 20 of 767 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 5' -67 NC_001847.1 + 107054 1.07 0.00036
Target:  5'- gCGCGGCCCCGGGCAGGCGCCACAGCAc -3'
miRNA:   3'- -GCGCCGGGGCCCGUCCGCGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 101018 0.87 0.012106
Target:  5'- gGCGGCCaCCGcGGCAGGCGCCGCAGg- -3'
miRNA:   3'- gCGCCGG-GGC-CCGUCCGCGGUGUCgu -5'
6380 5' -67 NC_001847.1 + 134263 0.84 0.018373
Target:  5'- gGCGGCCCCGGcGCGGGcCGCCGCcGCGc -3'
miRNA:   3'- gCGCCGGGGCC-CGUCC-GCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 31450 0.84 0.018373
Target:  5'- gGCGGCCCCGGcGCGGGcCGCCGCcGCGc -3'
miRNA:   3'- gCGCCGGGGCC-CGUCC-GCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 36378 0.84 0.018373
Target:  5'- cCGCGG-CCCGGGCAGcgcGCGCCGCGGCGa -3'
miRNA:   3'- -GCGCCgGGGCCCGUC---CGCGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 62496 0.84 0.019354
Target:  5'- gGCGGCCgCGGGguGGCgGCCACAGCc -3'
miRNA:   3'- gCGCCGGgGCCCguCCG-CGGUGUCGu -5'
6380 5' -67 NC_001847.1 + 88815 0.83 0.023642
Target:  5'- aCGCGGCCCgCGGGCGgccgugcugcgcucGGCGCUACGGCu -3'
miRNA:   3'- -GCGCCGGG-GCCCGU--------------CCGCGGUGUCGu -5'
6380 5' -67 NC_001847.1 + 1100 0.83 0.025096
Target:  5'- cCGCGGCCgCGGGC-GGCGCCGCcGCGg -3'
miRNA:   3'- -GCGCCGGgGCCCGuCCGCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 103913 0.83 0.025096
Target:  5'- cCGCGGCCgCGGGC-GGCGCCGCcGCGg -3'
miRNA:   3'- -GCGCCGGgGCCCGuCCGCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 131120 0.82 0.027838
Target:  5'- aGCGGCCCCGcgagaGGCGGGCGCCGggccCGGCGc -3'
miRNA:   3'- gCGCCGGGGC-----CCGUCCGCGGU----GUCGU- -5'
6380 5' -67 NC_001847.1 + 28307 0.82 0.027838
Target:  5'- aGCGGCCCCGcgagaGGCGGGCGCCGggccCGGCGc -3'
miRNA:   3'- gCGCCGGGGC-----CCGUCCGCGGU----GUCGU- -5'
6380 5' -67 NC_001847.1 + 79624 0.81 0.030875
Target:  5'- gGUcGCCCCGcGGCGGGCGCCGcCAGCAg -3'
miRNA:   3'- gCGcCGGGGC-CCGUCCGCGGU-GUCGU- -5'
6380 5' -67 NC_001847.1 + 78324 0.81 0.03243
Target:  5'- gCGCGcGCCgCGGGCccggcuuGGGCGCCGCGGCGg -3'
miRNA:   3'- -GCGC-CGGgGCCCG-------UCCGCGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 31928 0.81 0.034862
Target:  5'- cCGCGGCUCCGcGGCGGGUaagcggacgagccuGCCGCGGCGg -3'
miRNA:   3'- -GCGCCGGGGC-CCGUCCG--------------CGGUGUCGU- -5'
6380 5' -67 NC_001847.1 + 54392 0.8 0.036992
Target:  5'- gGCGGCCgCGGGCgaggcGGGCGCCGCcGCGg -3'
miRNA:   3'- gCGCCGGgGCCCG-----UCCGCGGUGuCGU- -5'
6380 5' -67 NC_001847.1 + 96579 0.8 0.037958
Target:  5'- cCGCGGCUCCGGcaGCAGGCGCUGcCAGUAa -3'
miRNA:   3'- -GCGCCGGGGCC--CGUCCGCGGU-GUCGU- -5'
6380 5' -67 NC_001847.1 + 52119 0.8 0.038949
Target:  5'- aGCGGCCgCGGGCcggcGGCGCCcCAGCGg -3'
miRNA:   3'- gCGCCGGgGCCCGu---CCGCGGuGUCGU- -5'
6380 5' -67 NC_001847.1 + 116148 0.8 0.038949
Target:  5'- gCGCGGCCCgaggcgcuggCGGccGCGGGCGCCGCGGCc -3'
miRNA:   3'- -GCGCCGGG----------GCC--CGUCCGCGGUGUCGu -5'
6380 5' -67 NC_001847.1 + 28729 0.8 0.04317
Target:  5'- gCGCGGCCgCGGGCAGcGuCGCCGCGcGCGu -3'
miRNA:   3'- -GCGCCGGgGCCCGUC-C-GCGGUGU-CGU- -5'
6380 5' -67 NC_001847.1 + 128171 0.78 0.055774
Target:  5'- gGCGGCCcgCCGGGCGGaaGCGCCGCcGCGa -3'
miRNA:   3'- gCGCCGG--GGCCCGUC--CGCGGUGuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.