Results 21 - 40 of 567 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6381 | 3' | -62.8 | NC_001847.1 | + | 134122 | 0.75 | 0.164684 |
Target: 5'- uGC-GGCGCGCcgCGGGCGGCGGccugguggaGCGCg -3' miRNA: 3'- -CGcCCGCGUGaaGCCCGCCGUC---------CGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 104423 | 0.75 | 0.153313 |
Target: 5'- cGCGcGGCGCACUgcgccgcggcagcacCGcGGCGcGCAGGUACa -3' miRNA: 3'- -CGC-CCGCGUGAa--------------GC-CCGC-CGUCCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 43076 | 0.77 | 0.128427 |
Target: 5'- cGCGGGCGCuGCUggcUC-GGCGGCggAGGCGCc -3' miRNA: 3'- -CGCCCGCG-UGA---AGcCCGCCG--UCCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 11308 | 0.8 | 0.079914 |
Target: 5'- aUGGGCGCGCccgccgaggccggCGGGCGGCuGGCGCc -3' miRNA: 3'- cGCCCGCGUGaa-----------GCCCGCCGuCCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 123793 | 0.74 | 0.195298 |
Target: 5'- -gGGGCcuGCGCggCGGcggcaGCGGCAGGCGCc -3' miRNA: 3'- cgCCCG--CGUGaaGCC-----CGCCGUCCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 36974 | 0.74 | 0.180289 |
Target: 5'- cGCGGGCGCcgGCgagCGGGCccgcgccgagcggcGGCGGcGCGCu -3' miRNA: 3'- -CGCCCGCG--UGaa-GCCCG--------------CCGUC-CGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 41820 | 0.76 | 0.14919 |
Target: 5'- cGCGGGCGgGCggcgCGGGUcccagGGCugGGGCACg -3' miRNA: 3'- -CGCCCGCgUGaa--GCCCG-----CCG--UCCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 43240 | 0.8 | 0.069482 |
Target: 5'- gGUGGGgGCGCg-CGGGCGGCGcGGCGCc -3' miRNA: 3'- -CGCCCgCGUGaaGCCCGCCGU-CCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 102868 | 0.75 | 0.177239 |
Target: 5'- gGgGGGCGgaaAUUUCGGcGCGGCGGGCcCg -3' miRNA: 3'- -CgCCCGCg--UGAAGCC-CGCCGUCCGuG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 128803 | 0.82 | 0.049473 |
Target: 5'- -aGGGCGgGCgggCGGGCGcGCAGGCGCg -3' miRNA: 3'- cgCCCGCgUGaa-GCCCGC-CGUCCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 122871 | 0.75 | 0.152556 |
Target: 5'- gGUGGGCGCGCUUggacucgCGGGacuGGUGGGCAUc -3' miRNA: 3'- -CGCCCGCGUGAA-------GCCCg--CCGUCCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 41107 | 0.75 | 0.168365 |
Target: 5'- aGCcGGCGCACUa-GGGUcgaucccGGCAGGCGCg -3' miRNA: 3'- -CGcCCGCGUGAagCCCG-------CCGUCCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 80839 | 0.76 | 0.145529 |
Target: 5'- uGgGGGgGCAgaUcCGGGCGGCGGcGCGCg -3' miRNA: 3'- -CgCCCgCGUgaA-GCCCGCCGUC-CGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 98595 | 0.76 | 0.131692 |
Target: 5'- -gGGGCGCcggcGCUU-GGGCGGCGcGGCACc -3' miRNA: 3'- cgCCCGCG----UGAAgCCCGCCGU-CCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 60299 | 0.78 | 0.104891 |
Target: 5'- aGCGGG-GCGg--CGGGCGGCAGcGCGCg -3' miRNA: 3'- -CGCCCgCGUgaaGCCCGCCGUC-CGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 53603 | 0.79 | 0.089967 |
Target: 5'- uGCGGGC-CACgguggCGGGCGGCGggguGGCACc -3' miRNA: 3'- -CGCCCGcGUGaa---GCCCGCCGU----CCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 76417 | 0.74 | 0.200057 |
Target: 5'- gGCGGGgGCACccCGcGGCGGgAGcGCGCg -3' miRNA: 3'- -CGCCCgCGUGaaGC-CCGCCgUC-CGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 98852 | 0.74 | 0.199577 |
Target: 5'- aGCGGcGCGCgaACUUCGuGCGGCaagccgaAGGCGCu -3' miRNA: 3'- -CGCC-CGCG--UGAAGCcCGCCG-------UCCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 35228 | 0.74 | 0.195298 |
Target: 5'- cGCGGaCGUGCUgcaggCGGcCGGCGGGCGCg -3' miRNA: 3'- -CGCCcGCGUGAa----GCCcGCCGUCCGUG- -5' |
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6381 | 3' | -62.8 | NC_001847.1 | + | 64166 | 0.74 | 0.186076 |
Target: 5'- uGCaGGCcgcuuGCGCggacgGGGCGGCGGGCGCg -3' miRNA: 3'- -CGcCCG-----CGUGaag--CCCGCCGUCCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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