miRNA display CGI


Results 1 - 20 of 567 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 3' -62.8 NC_001847.1 + 96922 0.83 0.043492
Target:  5'- cGCGuagaGGCGCGCggcccgggccuccgCGGGCGGCAGGCGCu -3'
miRNA:   3'- -CGC----CCGCGUGaa------------GCCCGCCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 41820 0.76 0.14919
Target:  5'- cGCGGGCGgGCggcgCGGGUcccagGGCugGGGCACg -3'
miRNA:   3'- -CGCCCGCgUGaa--GCCCG-----CCG--UCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 104423 0.75 0.153313
Target:  5'- cGCGcGGCGCACUgcgccgcggcagcacCGcGGCGcGCAGGUACa -3'
miRNA:   3'- -CGC-CCGCGUGAa--------------GC-CCGC-CGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 77664 0.67 0.499367
Target:  5'- cGCGGGCGCcgagguacuGCUggcCGagcgcuucaaGGCGGCGuGCGCg -3'
miRNA:   3'- -CGCCCGCG---------UGAa--GC----------CCGCCGUcCGUG- -5'
6381 3' -62.8 NC_001847.1 + 53603 0.79 0.089967
Target:  5'- uGCGGGC-CACgguggCGGGCGGCGggguGGCACc -3'
miRNA:   3'- -CGCCCGcGUGaa---GCCCGCCGU----CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 54388 0.78 0.099675
Target:  5'- gGCGGGCG-GCcgCGGGCgaGGCGGGCGCc -3'
miRNA:   3'- -CGCCCGCgUGaaGCCCG--CCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 60299 0.78 0.104891
Target:  5'- aGCGGG-GCGg--CGGGCGGCAGcGCGCg -3'
miRNA:   3'- -CGCCCgCGUgaaGCCCGCCGUC-CGUG- -5'
6381 3' -62.8 NC_001847.1 + 124934 0.77 0.1132
Target:  5'- aGCGGGCGCGCccUGGGCccggcggcggcGGCGGcGCGCa -3'
miRNA:   3'- -CGCCCGCGUGaaGCCCG-----------CCGUC-CGUG- -5'
6381 3' -62.8 NC_001847.1 + 98595 0.76 0.131692
Target:  5'- -gGGGCGCcggcGCUU-GGGCGGCGcGGCACc -3'
miRNA:   3'- cgCCCGCG----UGAAgCCCGCCGU-CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 33517 0.76 0.145529
Target:  5'- gGCGGGCGCcgccgcggagGCgcCGGGC-GCGGGCGCc -3'
miRNA:   3'- -CGCCCGCG----------UGaaGCCCGcCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 53825 0.76 0.135033
Target:  5'- cGCGGGCGCgGCUggcGGCGGCAgcggcGGCGCu -3'
miRNA:   3'- -CGCCCGCG-UGAagcCCGCCGU-----CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 43076 0.77 0.128427
Target:  5'- cGCGGGCGCuGCUggcUC-GGCGGCggAGGCGCc -3'
miRNA:   3'- -CGCCCGCG-UGA---AGcCCGCCG--UCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 128803 0.82 0.049473
Target:  5'- -aGGGCGgGCgggCGGGCGcGCAGGCGCg -3'
miRNA:   3'- cgCCCGCgUGaa-GCCCGC-CGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 80839 0.76 0.145529
Target:  5'- uGgGGGgGCAgaUcCGGGCGGCGGcGCGCg -3'
miRNA:   3'- -CgCCCgCGUgaA-GCCCGCCGUC-CGUG- -5'
6381 3' -62.8 NC_001847.1 + 43240 0.8 0.069482
Target:  5'- gGUGGGgGCGCg-CGGGCGGCGcGGCGCc -3'
miRNA:   3'- -CGCCCgCGUGaaGCCCGCCGU-CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 29506 0.77 0.120286
Target:  5'- cGCGGGCgGCGCUUCGGccgcagagcucgcccGCGcggcGCGGGCGCu -3'
miRNA:   3'- -CGCCCG-CGUGAAGCC---------------CGC----CGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 57656 0.76 0.145529
Target:  5'- cUGGGCGC-CgUCGGGCaGGCgguGGGCACg -3'
miRNA:   3'- cGCCCGCGuGaAGCCCG-CCG---UCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 122871 0.75 0.152556
Target:  5'- gGUGGGCGCGCUUggacucgCGGGacuGGUGGGCAUc -3'
miRNA:   3'- -CGCCCGCGUGAA-------GCCCg--CCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 11308 0.8 0.079914
Target:  5'- aUGGGCGCGCccgccgaggccggCGGGCGGCuGGCGCc -3'
miRNA:   3'- cGCCCGCGUGaa-----------GCCCGCCGuCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 34149 0.78 0.099675
Target:  5'- cGCGGcgaGCGCGCUgcgCGaGGCGGCugAGGCGCu -3'
miRNA:   3'- -CGCC---CGCGUGAa--GC-CCGCCG--UCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.