miRNA display CGI


Results 1 - 20 of 567 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 3' -62.8 NC_001847.1 + 105246 1.1 0.000507
Target:  5'- gGCGGGCGCACUUCGGGCGGCAGGCACu -3'
miRNA:   3'- -CGCCCGCGUGAAGCCCGCCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 133589 0.89 0.015391
Target:  5'- cGCGGGCGCGCUaUCGGGCgGGCGGGCu- -3'
miRNA:   3'- -CGCCCGCGUGA-AGCCCG-CCGUCCGug -5'
6381 3' -62.8 NC_001847.1 + 72752 0.85 0.035118
Target:  5'- gGCGGGUGCGCUaaagacgcgUCGGGCGGCGcGGCGu -3'
miRNA:   3'- -CGCCCGCGUGA---------AGCCCGCCGU-CCGUg -5'
6381 3' -62.8 NC_001847.1 + 96922 0.83 0.043492
Target:  5'- cGCGuagaGGCGCGCggcccgggccuccgCGGGCGGCAGGCGCu -3'
miRNA:   3'- -CGC----CCGCGUGaa------------GCCCGCCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 61318 0.83 0.045722
Target:  5'- cGCGGGUGCGCg--GGGCggGGCGGGCGCg -3'
miRNA:   3'- -CGCCCGCGUGaagCCCG--CCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 53025 0.83 0.045722
Target:  5'- cCGGGCGU----CGGGCGGCAGGCGCa -3'
miRNA:   3'- cGCCCGCGugaaGCCCGCCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 25990 0.82 0.049473
Target:  5'- -aGGGCGgGCgggCGGGCGcGCAGGCGCg -3'
miRNA:   3'- cgCCCGCgUGaa-GCCCGC-CGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 128803 0.82 0.049473
Target:  5'- -aGGGCGgGCgggCGGGCGcGCAGGCGCg -3'
miRNA:   3'- cgCCCGCgUGaa-GCCCGC-CGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 16668 0.82 0.050391
Target:  5'- cGCGGGCGCgucgcgcagccuugGCUgcgCGGGCgagccGGCAGGCGCa -3'
miRNA:   3'- -CGCCCGCG--------------UGAa--GCCCG-----CCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 76752 0.82 0.053524
Target:  5'- uCGGGCGC---UCGGGCGGgGGGCACg -3'
miRNA:   3'- cGCCCGCGugaAGCCCGCCgUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 43240 0.8 0.069482
Target:  5'- gGUGGGgGCGCg-CGGGCGGCGcGGCGCc -3'
miRNA:   3'- -CGCCCgCGUGaaGCCCGCCGU-CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 79404 0.8 0.07433
Target:  5'- cGCGGGCGCGagccggaccacCguggcgcccgaGGGCGGCGGGCACa -3'
miRNA:   3'- -CGCCCGCGU-----------Gaag--------CCCGCCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 15324 0.8 0.077074
Target:  5'- cGCGGGCGUAgCgggggCGGGCGGgGGGUGCg -3'
miRNA:   3'- -CGCCCGCGU-Gaa---GCCCGCCgUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 35569 0.8 0.077074
Target:  5'- gGCGuGCGCGCUUUGGaGCGGCGccGGCGCa -3'
miRNA:   3'- -CGCcCGCGUGAAGCC-CGCCGU--CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 11308 0.8 0.079914
Target:  5'- aUGGGCGCGCccgccgaggccggCGGGCGGCuGGCGCc -3'
miRNA:   3'- cGCCCGCGUGaa-----------GCCCGCCGuCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 53603 0.79 0.089967
Target:  5'- uGCGGGC-CACgguggCGGGCGGCGggguGGCACc -3'
miRNA:   3'- -CGCCCGcGUGaa---GCCCGCCGU----CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 70236 0.79 0.092306
Target:  5'- gGUGuGaCGCGCggggCGGGCGGCGGGCGCg -3'
miRNA:   3'- -CGCcC-GCGUGaa--GCCCGCCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 96488 0.78 0.097159
Target:  5'- gGCGGGCGuCGCcaCGGcaacGCGGCGGGCAUg -3'
miRNA:   3'- -CGCCCGC-GUGaaGCC----CGCCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 54388 0.78 0.099675
Target:  5'- gGCGGGCG-GCcgCGGGCgaGGCGGGCGCc -3'
miRNA:   3'- -CGCCCGCgUGaaGCCCG--CCGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 34149 0.78 0.099675
Target:  5'- cGCGGcgaGCGCGCUgcgCGaGGCGGCugAGGCGCu -3'
miRNA:   3'- -CGCC---CGCGUGAa--GC-CCGCCG--UCCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.