miRNA display CGI


Results 1 - 20 of 567 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 3' -62.8 NC_001847.1 + 49 0.7 0.324962
Target:  5'- cGCGGcGCGUGCaUUGcGGCGGgCGGGgGCg -3'
miRNA:   3'- -CGCC-CGCGUGaAGC-CCGCC-GUCCgUG- -5'
6381 3' -62.8 NC_001847.1 + 55 0.75 0.177239
Target:  5'- gGgGGGCGgaaAUUUCGGcGCGGCGGGCcCg -3'
miRNA:   3'- -CgCCCGCg--UGAAGCC-CGCCGUCCGuG- -5'
6381 3' -62.8 NC_001847.1 + 94 0.66 0.53726
Target:  5'- cGCGGaGCGCGa---GGGUagGGUuGGCACa -3'
miRNA:   3'- -CGCC-CGCGUgaagCCCG--CCGuCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 427 0.73 0.220114
Target:  5'- gGCGGGCGgGCggCGgcGGCGGC-GGCAg -3'
miRNA:   3'- -CGCCCGCgUGaaGC--CCGCCGuCCGUg -5'
6381 3' -62.8 NC_001847.1 + 451 0.67 0.527686
Target:  5'- cGCGGGCGUccgcucucacuaGCUUCGGcGCcGUcauGGGUGCc -3'
miRNA:   3'- -CGCCCGCG------------UGAAGCC-CGcCG---UCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 983 0.67 0.527686
Target:  5'- gGCGGG-GCuucCgcCGcGGCGGC-GGCACg -3'
miRNA:   3'- -CGCCCgCGu--GaaGC-CCGCCGuCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 1093 0.69 0.369143
Target:  5'- cCGGGCGcCGCggccgCGGGCGGCGccgccgcGGCc- -3'
miRNA:   3'- cGCCCGC-GUGaa---GCCCGCCGU-------CCGug -5'
6381 3' -62.8 NC_001847.1 + 1610 0.75 0.153313
Target:  5'- cGCGcGGCGCACUgcgccgcggcagcacCGcGGCGcGCAGGUACa -3'
miRNA:   3'- -CGC-CCGCGUGAa--------------GC-CCGC-CGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 1931 0.68 0.427512
Target:  5'- gGCGcGGCGgcCAC-UCGGGCcGCcGGCGCu -3'
miRNA:   3'- -CGC-CCGC--GUGaAGCCCGcCGuCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 2093 0.71 0.317875
Target:  5'- cGCGGG-GC-CcgCGcGGCGGCGGGcCGCg -3'
miRNA:   3'- -CGCCCgCGuGaaGC-CCGCCGUCC-GUG- -5'
6381 3' -62.8 NC_001847.1 + 2200 0.68 0.436163
Target:  5'- uGCGGGCGCACcUCaaacauGCGGUagAGGuCGCg -3'
miRNA:   3'- -CGCCCGCGUGaAGcc----CGCCG--UCC-GUG- -5'
6381 3' -62.8 NC_001847.1 + 2246 0.71 0.306779
Target:  5'- cGCGGGCGUgugguagucccCGGGCGGCAcgcGGCGg -3'
miRNA:   3'- -CGCCCGCGugaa-------GCCCGCCGU---CCGUg -5'
6381 3' -62.8 NC_001847.1 + 2297 0.67 0.490077
Target:  5'- gGCGGG-GC-CgcCGGGCGGCAugGGCc- -3'
miRNA:   3'- -CGCCCgCGuGaaGCCCGCCGU--CCGug -5'
6381 3' -62.8 NC_001847.1 + 2575 0.7 0.332166
Target:  5'- cGCGGGCGC-CUgcgCGGccgccGCGGCc-GCACg -3'
miRNA:   3'- -CGCCCGCGuGAa--GCC-----CGCCGucCGUG- -5'
6381 3' -62.8 NC_001847.1 + 2655 0.66 0.566318
Target:  5'- uGC-GGCGC-CUUCGcccGGCGGCucggccGGCAUc -3'
miRNA:   3'- -CGcCCGCGuGAAGC---CCGCCGu-----CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 2871 0.68 0.444915
Target:  5'- cGCGGGCGUcgucgUCGGGC--CGGGUGCg -3'
miRNA:   3'- -CGCCCGCGuga--AGCCCGccGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 3024 0.66 0.556581
Target:  5'- cGCGGGcCGCGCcgagcagcUC-GGCGGCccGGaGCACg -3'
miRNA:   3'- -CGCCC-GCGUGa-------AGcCCGCCG--UC-CGUG- -5'
6381 3' -62.8 NC_001847.1 + 3082 0.69 0.369926
Target:  5'- cGCGuccGGCGCGCaggccgCGGcCGGCAGGcCGCg -3'
miRNA:   3'- -CGC---CCGCGUGaa----GCCcGCCGUCC-GUG- -5'
6381 3' -62.8 NC_001847.1 + 3165 0.7 0.324962
Target:  5'- gGCGGGCcgccuccaGCGCcUCGcGGCaGGCGacGGCGCa -3'
miRNA:   3'- -CGCCCG--------CGUGaAGC-CCG-CCGU--CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 3293 0.67 0.471743
Target:  5'- aCGGcGCGCAgcUCGGcgagcGCGGCgcGGGCGCc -3'
miRNA:   3'- cGCC-CGCGUgaAGCC-----CGCCG--UCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.