miRNA display CGI


Results 1 - 20 of 567 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 3' -62.8 NC_001847.1 + 129242 0.66 0.566318
Target:  5'- cCGGGCGCACaaucugcgaCGGcGCGGCcgcccuGCGCg -3'
miRNA:   3'- cGCCCGCGUGaa-------GCC-CGCCGuc----CGUG- -5'
6381 3' -62.8 NC_001847.1 + 88606 0.66 0.584931
Target:  5'- gGCGGGCGCgcgcuccACUUUGuGcGCGcGCAcGuGCGCg -3'
miRNA:   3'- -CGCCCGCG-------UGAAGC-C-CGC-CGU-C-CGUG- -5'
6381 3' -62.8 NC_001847.1 + 66661 0.66 0.584931
Target:  5'- uGCcuGGCGCGCUUgcgcccgCGcGGCGgggccccggccGCGGGCGCg -3'
miRNA:   3'- -CGc-CCGCGUGAA-------GC-CCGC-----------CGUCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 73471 0.66 0.576098
Target:  5'- aUGGGCGCAUgucUCGaaccuucauGGCGGCcgcgguggcGGCGCu -3'
miRNA:   3'- cGCCCGCGUGa--AGC---------CCGCCGu--------CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 53743 0.66 0.576098
Target:  5'- cGCGGcguaGCGCGgaUCcGGCGGCccgAGGCGg -3'
miRNA:   3'- -CGCC----CGCGUgaAGcCCGCCG---UCCGUg -5'
6381 3' -62.8 NC_001847.1 + 92972 0.66 0.576098
Target:  5'- uCGGGCGgg---CGGGCGGCGuGCAg -3'
miRNA:   3'- cGCCCGCgugaaGCCCGCCGUcCGUg -5'
6381 3' -62.8 NC_001847.1 + 17832 0.66 0.576098
Target:  5'- aGUGcGGCGCACgUCGGcGaaacagaGGUcgucGGGCGCg -3'
miRNA:   3'- -CGC-CCGCGUGaAGCC-Cg------CCG----UCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 130601 0.66 0.575118
Target:  5'- cGCc-GCGcCACccgCGGGCGGCcgccgcgAGGCACg -3'
miRNA:   3'- -CGccCGC-GUGaa-GCCCGCCG-------UCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 18106 0.66 0.575118
Target:  5'- -gGGGUGCuccagcaGCUcCGcGGCGGUgGGGCGCg -3'
miRNA:   3'- cgCCCGCG-------UGAaGC-CCGCCG-UCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 12205 0.66 0.585915
Target:  5'- cGUaGGUGCGCUUCuGGCuuGCGcGGCGCg -3'
miRNA:   3'- -CGcCCGCGUGAAGcCCGc-CGU-CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 30427 0.66 0.585915
Target:  5'- gGCGGGCucucGCACgcgcUCGcGGCGcUGGGCAa -3'
miRNA:   3'- -CGCCCG----CGUGa---AGC-CCGCcGUCCGUg -5'
6381 3' -62.8 NC_001847.1 + 69258 0.66 0.585915
Target:  5'- cGCGuGGCGCA---UGGGCGGCcccCACg -3'
miRNA:   3'- -CGC-CCGCGUgaaGCCCGCCGuccGUG- -5'
6381 3' -62.8 NC_001847.1 + 121262 0.66 0.585915
Target:  5'- cCGGGCGCACca---GCGGCAGuGcCGCg -3'
miRNA:   3'- cGCCCGCGUGaagccCGCCGUC-C-GUG- -5'
6381 3' -62.8 NC_001847.1 + 55218 0.66 0.585915
Target:  5'- cGCGa-CGUACUUCGuGGCGGCgacgcuguugggGGaGCACg -3'
miRNA:   3'- -CGCccGCGUGAAGC-CCGCCG------------UC-CGUG- -5'
6381 3' -62.8 NC_001847.1 + 39825 0.66 0.585915
Target:  5'- gGCGGGCccgaGCGCUUCcuGcGUGGCGcGCGCc -3'
miRNA:   3'- -CGCCCG----CGUGAAGc-C-CGCCGUcCGUG- -5'
6381 3' -62.8 NC_001847.1 + 22631 0.66 0.585915
Target:  5'- cGCaGGGCGCGuc-CGGGgagGGCGGGCu- -3'
miRNA:   3'- -CG-CCCGCGUgaaGCCCg--CCGUCCGug -5'
6381 3' -62.8 NC_001847.1 + 13844 0.66 0.585915
Target:  5'- cGCGcGGCGUuuauuCUUCGcugauGGUGGCgaggggGGGCGCc -3'
miRNA:   3'- -CGC-CCGCGu----GAAGC-----CCGCCG------UCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 12558 0.66 0.585915
Target:  5'- cGCaGGUGCGCaaCGGGCGccGCGuacgcGGCGCc -3'
miRNA:   3'- -CGcCCGCGUGaaGCCCGC--CGU-----CCGUG- -5'
6381 3' -62.8 NC_001847.1 + 106795 0.66 0.585915
Target:  5'- aGCGGGCggaugacggccGCGCUgcccgCcGGCGaGC-GGCACg -3'
miRNA:   3'- -CGCCCG-----------CGUGAa----GcCCGC-CGuCCGUG- -5'
6381 3' -62.8 NC_001847.1 + 73358 0.66 0.585915
Target:  5'- cGCGcGUGC-CggCGGGggguCGGCGGGCAUu -3'
miRNA:   3'- -CGCcCGCGuGaaGCCC----GCCGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.