miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 49419 0.67 0.856686
Target:  5'- gCGcAGcCUGCCGccGUGCacuggcgcuuguGGCUCGCUCa -3'
miRNA:   3'- aGCaUC-GAUGGCa-CACG------------UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 80926 0.67 0.856686
Target:  5'- cCGUGGCcGCCGUGcugGCcGaaaaUCGCCg -3'
miRNA:   3'- aGCAUCGaUGGCACa--CGuCg---AGCGGg -5'
6381 5' -56 NC_001847.1 + 77970 0.67 0.856686
Target:  5'- gCGUGcuuuucGCUGCUGgcggGCGGCgagcgCGCCCu -3'
miRNA:   3'- aGCAU------CGAUGGCaca-CGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 91332 0.67 0.848782
Target:  5'- uUCGgcGCgGCCGUcgagcgucaGUaGUAGCgCGCCCg -3'
miRNA:   3'- -AGCauCGaUGGCA---------CA-CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 58382 0.67 0.848782
Target:  5'- cUCGUAGCgggUGCCGgcggGCAGCa-GCUCu -3'
miRNA:   3'- -AGCAUCG---AUGGCaca-CGUCGagCGGG- -5'
6381 5' -56 NC_001847.1 + 46927 0.67 0.848782
Target:  5'- gUCGggcccgGGCUccggGCCGcGUGCGGCgaaGCCa -3'
miRNA:   3'- -AGCa-----UCGA----UGGCaCACGUCGag-CGGg -5'
6381 5' -56 NC_001847.1 + 127341 0.67 0.848782
Target:  5'- gCGgccGGCUGCCGcGgcagggGCGGCgggGCCCg -3'
miRNA:   3'- aGCa--UCGAUGGCaCa-----CGUCGag-CGGG- -5'
6381 5' -56 NC_001847.1 + 49752 0.67 0.840678
Target:  5'- gCGUGccGCUguACCccGUGCAGCUguacaUGCCCg -3'
miRNA:   3'- aGCAU--CGA--UGGcaCACGUCGA-----GCGGG- -5'
6381 5' -56 NC_001847.1 + 120979 0.67 0.840678
Target:  5'- gCGUAaGCgcgGCCGUcgcccuaGCGGC-CGCCCa -3'
miRNA:   3'- aGCAU-CGa--UGGCAca-----CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 125445 0.67 0.83322
Target:  5'- gCGUGGCUgGCCGgagGacgggcgggucggcgGCAGCUCGCg- -3'
miRNA:   3'- aGCAUCGA-UGGCa--Ca--------------CGUCGAGCGgg -5'
6381 5' -56 NC_001847.1 + 57558 0.67 0.832382
Target:  5'- ---cGGgUGCCGccGUGCgAGCUCgGCCCg -3'
miRNA:   3'- agcaUCgAUGGCa-CACG-UCGAG-CGGG- -5'
6381 5' -56 NC_001847.1 + 121828 0.67 0.832382
Target:  5'- -gGUacAGCUcgGCCGacUGCAGCccggCGCCCg -3'
miRNA:   3'- agCA--UCGA--UGGCacACGUCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 131608 0.67 0.823901
Target:  5'- gCGUgcagGGCUGCCGgg-GCcacAGCUCGUUCa -3'
miRNA:   3'- aGCA----UCGAUGGCacaCG---UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 93670 0.67 0.823901
Target:  5'- uUCGUGcGCaUGCCGcgcGUGCAGCUCucguUCCg -3'
miRNA:   3'- -AGCAU-CG-AUGGCa--CACGUCGAGc---GGG- -5'
6381 5' -56 NC_001847.1 + 28795 0.67 0.823901
Target:  5'- gCGUgcagGGCUGCCGgg-GCcacAGCUCGUUCa -3'
miRNA:   3'- aGCA----UCGAUGGCacaCG---UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 85949 0.67 0.823901
Target:  5'- cCGUcgcGUUGCCGUccccgcuUGCAGCggaCGCCCg -3'
miRNA:   3'- aGCAu--CGAUGGCAc------ACGUCGa--GCGGG- -5'
6381 5' -56 NC_001847.1 + 114229 0.67 0.823901
Target:  5'- ---cAGUccuCCGUGUaGC-GCUCGCCCg -3'
miRNA:   3'- agcaUCGau-GGCACA-CGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 1448 0.68 0.815244
Target:  5'- gCGUGGCcACCGUGUaGCGcacguuGC-CGCCg -3'
miRNA:   3'- aGCAUCGaUGGCACA-CGU------CGaGCGGg -5'
6381 5' -56 NC_001847.1 + 104261 0.68 0.815244
Target:  5'- gCGUGGCcACCGUGUaGCGcacguuGC-CGCCg -3'
miRNA:   3'- aGCAUCGaUGGCACA-CGU------CGaGCGGg -5'
6381 5' -56 NC_001847.1 + 81362 0.68 0.815244
Target:  5'- cUCGcGGCgGCUGcgGUGCuGC-CGCCCu -3'
miRNA:   3'- -AGCaUCGaUGGCa-CACGuCGaGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.