Results 21 - 40 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6381 | 5' | -56 | NC_001847.1 | + | 80859 | 0.68 | 0.788293 |
Target: 5'- gCGgcGCgcgucgagGCCGUccgGCAGCaCGCCCg -3' miRNA: 3'- aGCauCGa-------UGGCAca-CGUCGaGCGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 86502 | 0.68 | 0.779012 |
Target: 5'- gCGgcGCUgcACCGUcGcGCGGCggcugggCGCCCg -3' miRNA: 3'- aGCauCGA--UGGCA-CaCGUCGa------GCGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 118430 | 0.69 | 0.730792 |
Target: 5'- uUCGcUGGUgAUCGUGcucgucugcgccUGcCGGCUCGCCCg -3' miRNA: 3'- -AGC-AUCGaUGGCAC------------AC-GUCGAGCGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 94243 | 0.72 | 0.547253 |
Target: 5'- gCGcGGC-GCCGUGgaGCGGCUCGCgCCc -3' miRNA: 3'- aGCaUCGaUGGCACa-CGUCGAGCG-GG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 80926 | 0.67 | 0.856686 |
Target: 5'- cCGUGGCcGCCGUGcugGCcGaaaaUCGCCg -3' miRNA: 3'- aGCAUCGaUGGCACa--CGuCg---AGCGGg -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 131608 | 0.67 | 0.823901 |
Target: 5'- gCGUgcagGGCUGCCGgg-GCcacAGCUCGUUCa -3' miRNA: 3'- aGCA----UCGAUGGCacaCG---UCGAGCGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 20582 | 0.68 | 0.779012 |
Target: 5'- gUCGUAGagGCCGcUGUGUaccAGCaUGCCCu -3' miRNA: 3'- -AGCAUCgaUGGC-ACACG---UCGaGCGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 35544 | 0.74 | 0.44134 |
Target: 5'- gUCGUGGCUGCCGag-GCGGCgCGCgaCCg -3' miRNA: 3'- -AGCAUCGAUGGCacaCGUCGaGCG--GG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 81362 | 0.68 | 0.815244 |
Target: 5'- cUCGcGGCgGCUGcgGUGCuGC-CGCCCu -3' miRNA: 3'- -AGCaUCGaUGGCa-CACGuCGaGCGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 97196 | 0.76 | 0.372044 |
Target: 5'- --aUGGCUACCG-GUGCGguuGCUCGCCg -3' miRNA: 3'- agcAUCGAUGGCaCACGU---CGAGCGGg -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 43079 | 0.68 | 0.779012 |
Target: 5'- -gGgcGCUGCUGgcucgGCGGCggaggCGCCCg -3' miRNA: 3'- agCauCGAUGGCaca--CGUCGa----GCGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 79357 | 0.68 | 0.796524 |
Target: 5'- ---cAGCUGCCGcgcgaugcgaagcUGUGCggcagcgcgcGGCUCGCCg -3' miRNA: 3'- agcaUCGAUGGC-------------ACACG----------UCGAGCGGg -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 93759 | 0.68 | 0.769598 |
Target: 5'- gCGcGGCUGCCGgcgGCGGCcCGgCCg -3' miRNA: 3'- aGCaUCGAUGGCacaCGUCGaGCgGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 88455 | 0.69 | 0.740647 |
Target: 5'- cCGcgGGCcccgACCGcgcgcgcGUGCuGCUCGCCCu -3' miRNA: 3'- aGCa-UCGa---UGGCa------CACGuCGAGCGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 49224 | 0.7 | 0.67017 |
Target: 5'- cCGcgGGCU-UCGUGUacgucugcgacGCGGCUCGCCUg -3' miRNA: 3'- aGCa-UCGAuGGCACA-----------CGUCGAGCGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 74842 | 0.71 | 0.622819 |
Target: 5'- aUCGUGGUgcgcuuuaggggcgGCUGUGgugGCGGCUC-CCCu -3' miRNA: 3'- -AGCAUCGa-------------UGGCACa--CGUCGAGcGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 43598 | 0.66 | 0.879138 |
Target: 5'- gCGUGGCgcugggGCCG-GUGCuGGCcacgGCCCu -3' miRNA: 3'- aGCAUCGa-----UGGCaCACG-UCGag--CGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 28726 | 0.66 | 0.864384 |
Target: 5'- gCGgcGCgGCCGcGgGCAGCgUCGCCg -3' miRNA: 3'- aGCauCGaUGGCaCaCGUCG-AGCGGg -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 91332 | 0.67 | 0.848782 |
Target: 5'- uUCGgcGCgGCCGUcgagcgucaGUaGUAGCgCGCCCg -3' miRNA: 3'- -AGCauCGaUGGCA---------CA-CGUCGaGCGGG- -5' |
|||||||
6381 | 5' | -56 | NC_001847.1 | + | 114229 | 0.67 | 0.823901 |
Target: 5'- ---cAGUccuCCGUGUaGC-GCUCGCCCg -3' miRNA: 3'- agcaUCGau-GGCACA-CGuCGAGCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home