miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 37310 0.77 0.317783
Target:  5'- aCGU-GCUaGCCGUGUgGCGGCacgCGCCCg -3'
miRNA:   3'- aGCAuCGA-UGGCACA-CGUCGa--GCGGG- -5'
6381 5' -56 NC_001847.1 + 20582 0.68 0.779012
Target:  5'- gUCGUAGagGCCGcUGUGUaccAGCaUGCCCu -3'
miRNA:   3'- -AGCAUCgaUGGC-ACACG---UCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 86502 0.68 0.779012
Target:  5'- gCGgcGCUgcACCGUcGcGCGGCggcugggCGCCCg -3'
miRNA:   3'- aGCauCGA--UGGCA-CaCGUCGa------GCGGG- -5'
6381 5' -56 NC_001847.1 + 79349 0.68 0.796524
Target:  5'- cUCGcgagcAGCUGCCGcgcgaugcgaagcUGUGCggcagcgcgcGGCUCGCCg -3'
miRNA:   3'- -AGCa----UCGAUGGC-------------ACACG----------UCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 74842 0.71 0.622819
Target:  5'- aUCGUGGUgcgcuuuaggggcgGCUGUGgugGCGGCUC-CCCu -3'
miRNA:   3'- -AGCAUCGa-------------UGGCACa--CGUCGAGcGGG- -5'
6381 5' -56 NC_001847.1 + 86998 0.71 0.639312
Target:  5'- aCGUGGUgGCUGaGgacgGCGGCUgGCCCg -3'
miRNA:   3'- aGCAUCGaUGGCaCa---CGUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 49224 0.7 0.67017
Target:  5'- cCGcgGGCU-UCGUGUacgucugcgacGCGGCUCGCCUg -3'
miRNA:   3'- aGCa-UCGAuGGCACA-----------CGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 65680 0.7 0.710832
Target:  5'- gCGcAGCUGgCCGUGccccGCgAGCUaCGCCCg -3'
miRNA:   3'- aGCaUCGAU-GGCACa---CG-UCGA-GCGGG- -5'
6381 5' -56 NC_001847.1 + 88455 0.69 0.740647
Target:  5'- cCGcgGGCcccgACCGcgcgcgcGUGCuGCUCGCCCu -3'
miRNA:   3'- aGCa-UCGa---UGGCa------CACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 35133 0.68 0.769598
Target:  5'- --cUGGCgGCCGUGccuCGGCUCGCCa -3'
miRNA:   3'- agcAUCGaUGGCACac-GUCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 24403 0.69 0.750406
Target:  5'- --aUGGCgGCCGUG-GCGGC-CGCCg -3'
miRNA:   3'- agcAUCGaUGGCACaCGUCGaGCGGg -5'
6381 5' -56 NC_001847.1 + 118430 0.69 0.730792
Target:  5'- uUCGcUGGUgAUCGUGcucgucugcgccUGcCGGCUCGCCCg -3'
miRNA:   3'- -AGC-AUCGaUGGCAC------------AC-GUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 97196 0.76 0.372044
Target:  5'- --aUGGCUACCG-GUGCGguuGCUCGCCg -3'
miRNA:   3'- agcAUCGAUGGCaCACGU---CGAGCGGg -5'
6381 5' -56 NC_001847.1 + 93759 0.68 0.769598
Target:  5'- gCGcGGCUGCCGgcgGCGGCcCGgCCg -3'
miRNA:   3'- aGCaUCGAUGGCacaCGUCGaGCgGG- -5'
6381 5' -56 NC_001847.1 + 35544 0.74 0.44134
Target:  5'- gUCGUGGCUGCCGag-GCGGCgCGCgaCCg -3'
miRNA:   3'- -AGCAUCGAUGGCacaCGUCGaGCG--GG- -5'
6381 5' -56 NC_001847.1 + 96567 0.69 0.720851
Target:  5'- gCGgucuGCUgGCCGUGUGCcuGggCGCCCg -3'
miRNA:   3'- aGCau--CGA-UGGCACACGu-CgaGCGGG- -5'
6381 5' -56 NC_001847.1 + 46196 0.68 0.769598
Target:  5'- -gGUAGCgGCCGgcgGCGGC-CGCCg -3'
miRNA:   3'- agCAUCGaUGGCacaCGUCGaGCGGg -5'
6381 5' -56 NC_001847.1 + 43079 0.68 0.779012
Target:  5'- -gGgcGCUGCUGgcucgGCGGCggaggCGCCCg -3'
miRNA:   3'- agCauCGAUGGCaca--CGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 94243 0.72 0.547253
Target:  5'- gCGcGGC-GCCGUGgaGCGGCUCGCgCCc -3'
miRNA:   3'- aGCaUCGaUGGCACa-CGUCGAGCG-GG- -5'
6381 5' -56 NC_001847.1 + 34088 0.71 0.649615
Target:  5'- gCGUGGCggccGCCGUGgcucgcgcgGCGGCggaGCCUg -3'
miRNA:   3'- aGCAUCGa---UGGCACa--------CGUCGag-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.