miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 1448 0.68 0.815244
Target:  5'- gCGUGGCcACCGUGUaGCGcacguuGC-CGCCg -3'
miRNA:   3'- aGCAUCGaUGGCACA-CGU------CGaGCGGg -5'
6381 5' -56 NC_001847.1 + 3412 0.68 0.787371
Target:  5'- gUCGUagcggcGGCUcauggccacgcagGCCGccacGUGCGGCagCGCCCa -3'
miRNA:   3'- -AGCA------UCGA-------------UGGCa---CACGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 8205 0.66 0.899584
Target:  5'- cUCGaGGC-GCCGUGccagcagaaGCAGCUgCGCCa -3'
miRNA:   3'- -AGCaUCGaUGGCACa--------CGUCGA-GCGGg -5'
6381 5' -56 NC_001847.1 + 9874 0.67 0.856686
Target:  5'- aCGgcucCUGCCGccucUGCcGCUCGCCCg -3'
miRNA:   3'- aGCauc-GAUGGCac--ACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 11462 0.66 0.864384
Target:  5'- ---cGGCUACCGUGcGCguGGCgaGCCCc -3'
miRNA:   3'- agcaUCGAUGGCACaCG--UCGagCGGG- -5'
6381 5' -56 NC_001847.1 + 11526 0.7 0.664014
Target:  5'- aCGUAGCcGCCGgGUGCugcguucgcgucuggAGUgCGCCCa -3'
miRNA:   3'- aGCAUCGaUGGCaCACG---------------UCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 11971 0.66 0.892999
Target:  5'- cUCGaGGCgUGCCGuUGgcgGgGGCUCGCgCa -3'
miRNA:   3'- -AGCaUCG-AUGGC-ACa--CgUCGAGCGgG- -5'
6381 5' -56 NC_001847.1 + 15396 0.71 0.598123
Target:  5'- gUCGgGGCUgggGCCGgGUuuCGGCUCGCCCu -3'
miRNA:   3'- -AGCaUCGA---UGGCaCAc-GUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 18331 0.71 0.629003
Target:  5'- gCGgagcAGCUGCCGgGcGCAGUcgcggUCGCCCa -3'
miRNA:   3'- aGCa---UCGAUGGCaCaCGUCG-----AGCGGG- -5'
6381 5' -56 NC_001847.1 + 18444 0.68 0.797431
Target:  5'- cCGcGGCcaGCCGUGcGguGCcgCGCCCg -3'
miRNA:   3'- aGCaUCGa-UGGCACaCguCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 18555 0.67 0.856686
Target:  5'- -aGUAGCggggcucggugaccgGCCcGUGUGCcGCgccaaagUCGCCCa -3'
miRNA:   3'- agCAUCGa--------------UGG-CACACGuCG-------AGCGGG- -5'
6381 5' -56 NC_001847.1 + 19590 0.66 0.878421
Target:  5'- cCGUAcuuaagcGUUGCCGUG-GCGG-UCGCCa -3'
miRNA:   3'- aGCAU-------CGAUGGCACaCGUCgAGCGGg -5'
6381 5' -56 NC_001847.1 + 20224 0.66 0.87187
Target:  5'- aCGcgAGCccCCGUGccccaGgGGCUCGCCCc -3'
miRNA:   3'- aGCa-UCGauGGCACa----CgUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 20582 0.68 0.779012
Target:  5'- gUCGUAGagGCCGcUGUGUaccAGCaUGCCCu -3'
miRNA:   3'- -AGCAUCgaUGGC-ACACG---UCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 24403 0.69 0.750406
Target:  5'- --aUGGCgGCCGUG-GCGGC-CGCCg -3'
miRNA:   3'- agcAUCGaUGGCACaCGUCGaGCGGg -5'
6381 5' -56 NC_001847.1 + 24938 0.68 0.806418
Target:  5'- -gGUacAGCaGCUGg--GCGGCUUGCCCg -3'
miRNA:   3'- agCA--UCGaUGGCacaCGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 28726 0.66 0.864384
Target:  5'- gCGgcGCgGCCGcGgGCAGCgUCGCCg -3'
miRNA:   3'- aGCauCGaUGGCaCaCGUCG-AGCGGg -5'
6381 5' -56 NC_001847.1 + 28795 0.67 0.823901
Target:  5'- gCGUgcagGGCUGCCGgg-GCcacAGCUCGUUCa -3'
miRNA:   3'- aGCA----UCGAUGGCacaCG---UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 28988 0.66 0.892999
Target:  5'- aCGUgcgccaugcuagAGCgcGCCGUGcuggcGCAGCUaucgCGCCCa -3'
miRNA:   3'- aGCA------------UCGa-UGGCACa----CGUCGA----GCGGG- -5'
6381 5' -56 NC_001847.1 + 29011 0.66 0.886182
Target:  5'- ---cGGC-GCCGgcgGCAGCggCGCCCg -3'
miRNA:   3'- agcaUCGaUGGCacaCGUCGa-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.