miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 105282 1.13 0.001368
Target:  5'- gUCGUAGCUACCGUGUGCAGCUCGCCCa -3'
miRNA:   3'- -AGCAUCGAUGGCACACGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 52069 0.8 0.22431
Target:  5'- cCGUGGCUGCCGUGuUGC-GCUCuucggccgcgccgcgGCCCa -3'
miRNA:   3'- aGCAUCGAUGGCAC-ACGuCGAG---------------CGGG- -5'
6381 5' -56 NC_001847.1 + 37310 0.77 0.317783
Target:  5'- aCGU-GCUaGCCGUGUgGCGGCacgCGCCCg -3'
miRNA:   3'- aGCAuCGA-UGGCACA-CGUCGa--GCGGG- -5'
6381 5' -56 NC_001847.1 + 97196 0.76 0.372044
Target:  5'- --aUGGCUACCG-GUGCGguuGCUCGCCg -3'
miRNA:   3'- agcAUCGAUGGCaCACGU---CGAGCGGg -5'
6381 5' -56 NC_001847.1 + 100290 0.75 0.414488
Target:  5'- cUCGaUGGCUGCCGUcgcccgcUGCGcGCUCGCCUc -3'
miRNA:   3'- -AGC-AUCGAUGGCAc------ACGU-CGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 35544 0.74 0.44134
Target:  5'- gUCGUGGCUGCCGag-GCGGCgCGCgaCCg -3'
miRNA:   3'- -AGCAUCGAUGGCacaCGUCGaGCG--GG- -5'
6381 5' -56 NC_001847.1 + 63424 0.74 0.478619
Target:  5'- cUUGUAGaCcGCCGUGcaguccucggGCAGCUCGCCg -3'
miRNA:   3'- -AGCAUC-GaUGGCACa---------CGUCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 44070 0.73 0.48818
Target:  5'- uUCGUgcAGCUGUCGUGccugcUGCGGCgucugCGCCCg -3'
miRNA:   3'- -AGCA--UCGAUGGCAC-----ACGUCGa----GCGGG- -5'
6381 5' -56 NC_001847.1 + 94243 0.72 0.547253
Target:  5'- gCGcGGC-GCCGUGgaGCGGCUCGCgCCc -3'
miRNA:   3'- aGCaUCGaUGGCACa-CGUCGAGCG-GG- -5'
6381 5' -56 NC_001847.1 + 15396 0.71 0.598123
Target:  5'- gUCGgGGCUgggGCCGgGUuuCGGCUCGCCCu -3'
miRNA:   3'- -AGCaUCGA---UGGCaCAc-GUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 74842 0.71 0.622819
Target:  5'- aUCGUGGUgcgcuuuaggggcgGCUGUGgugGCGGCUC-CCCu -3'
miRNA:   3'- -AGCAUCGa-------------UGGCACa--CGUCGAGcGGG- -5'
6381 5' -56 NC_001847.1 + 18331 0.71 0.629003
Target:  5'- gCGgagcAGCUGCCGgGcGCAGUcgcggUCGCCCa -3'
miRNA:   3'- aGCa---UCGAUGGCaCaCGUCG-----AGCGGG- -5'
6381 5' -56 NC_001847.1 + 78854 0.71 0.629003
Target:  5'- -aGUAGCUGgUGUGcucGCGGUgcgCGCCCu -3'
miRNA:   3'- agCAUCGAUgGCACa--CGUCGa--GCGGG- -5'
6381 5' -56 NC_001847.1 + 86998 0.71 0.639312
Target:  5'- aCGUGGUgGCUGaGgacgGCGGCUgGCCCg -3'
miRNA:   3'- aGCAUCGaUGGCaCa---CGUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 131349 0.71 0.649615
Target:  5'- cCGUgccGGCacGCCGUcGUGCAGCacauccCGCCCg -3'
miRNA:   3'- aGCA---UCGa-UGGCA-CACGUCGa-----GCGGG- -5'
6381 5' -56 NC_001847.1 + 43942 0.71 0.649615
Target:  5'- cCGUGcccGCUGCCGUGcUGCcguaccGGCUgGCCUu -3'
miRNA:   3'- aGCAU---CGAUGGCAC-ACG------UCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 34088 0.71 0.649615
Target:  5'- gCGUGGCggccGCCGUGgcucgcgcgGCGGCggaGCCUg -3'
miRNA:   3'- aGCAUCGa---UGGCACa--------CGUCGag-CGGG- -5'
6381 5' -56 NC_001847.1 + 11526 0.7 0.664014
Target:  5'- aCGUAGCcGCCGgGUGCugcguucgcgucuggAGUgCGCCCa -3'
miRNA:   3'- aGCAUCGaUGGCaCACG---------------UCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 49224 0.7 0.67017
Target:  5'- cCGcgGGCU-UCGUGUacgucugcgacGCGGCUCGCCUg -3'
miRNA:   3'- aGCa-UCGAuGGCACA-----------CGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 62246 0.7 0.680405
Target:  5'- cUCGUGGCgcGCCaccUGCAGCU-GCCCg -3'
miRNA:   3'- -AGCAUCGa-UGGcacACGUCGAgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.