miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6382 5' -49.8 NC_001847.1 + 60307 0.66 0.994347
Target:  5'- -gGCGGGcgGCAgcgcgcgcgccaccUGCUCGCgcguGAGGAc -3'
miRNA:   3'- caCGUCCa-UGU--------------ACGAGCGauu-CUUCU- -5'
6382 5' -49.8 NC_001847.1 + 55695 0.66 0.993711
Target:  5'- -aGgGGGUGCGUGCaaacggCGC-GAGggGGc -3'
miRNA:   3'- caCgUCCAUGUACGa-----GCGaUUCuuCU- -5'
6382 5' -49.8 NC_001847.1 + 115674 0.66 0.992704
Target:  5'- cGUGCGGGUGagcgGCUgCGCgGGGgcGAg -3'
miRNA:   3'- -CACGUCCAUgua-CGA-GCGaUUCuuCU- -5'
6382 5' -49.8 NC_001847.1 + 22944 0.66 0.991573
Target:  5'- -cGCAGGUagGCAUcGC-CGCaaacgAGGAGGAg -3'
miRNA:   3'- caCGUCCA--UGUA-CGaGCGa----UUCUUCU- -5'
6382 5' -49.8 NC_001847.1 + 70079 0.67 0.988898
Target:  5'- -cGCuGGgAC-UGCUCGCgGAGGAGGc -3'
miRNA:   3'- caCGuCCaUGuACGAGCGaUUCUUCU- -5'
6382 5' -49.8 NC_001847.1 + 39022 0.67 0.9837
Target:  5'- aGUGCGGcuaaUAUAUGCUCGCUGAu---- -3'
miRNA:   3'- -CACGUCc---AUGUACGAGCGAUUcuucu -5'
6382 5' -49.8 NC_001847.1 + 59034 0.67 0.9837
Target:  5'- -gGCGGGUGCG-GCg-GCgGAGGAGAg -3'
miRNA:   3'- caCGUCCAUGUaCGagCGaUUCUUCU- -5'
6382 5' -49.8 NC_001847.1 + 117040 0.67 0.981611
Target:  5'- -gGCGGGg----GCUCGCcGAGGAGGc -3'
miRNA:   3'- caCGUCCauguaCGAGCGaUUCUUCU- -5'
6382 5' -49.8 NC_001847.1 + 107605 0.68 0.97684
Target:  5'- -cGUGGGUGCGUGCggugGCcugGGGGAGAc -3'
miRNA:   3'- caCGUCCAUGUACGag--CGa--UUCUUCU- -5'
6382 5' -49.8 NC_001847.1 + 4792 0.68 0.97684
Target:  5'- -cGUGGGUGCGUGCggugGCcugGGGGAGAc -3'
miRNA:   3'- caCGUCCAUGUACGag--CGa--UUCUUCU- -5'
6382 5' -49.8 NC_001847.1 + 88293 0.68 0.971217
Target:  5'- cUGCuGGgccgACGcgGCUCGCggcgAGGAGGAa -3'
miRNA:   3'- cACGuCCa---UGUa-CGAGCGa---UUCUUCU- -5'
6382 5' -49.8 NC_001847.1 + 73123 0.69 0.96104
Target:  5'- -cGgAGGUAgccgcCGUGCUCGCggaccuGGAGGAg -3'
miRNA:   3'- caCgUCCAU-----GUACGAGCGau----UCUUCU- -5'
6382 5' -49.8 NC_001847.1 + 65553 0.7 0.933797
Target:  5'- -cGCGgacGGcUACGUGCUCGCgGAGGAGc -3'
miRNA:   3'- caCGU---CC-AUGUACGAGCGaUUCUUCu -5'
6382 5' -49.8 NC_001847.1 + 26043 0.7 0.933797
Target:  5'- gGUGCGGGccAgGUGCUCGCUcGGcAGGc -3'
miRNA:   3'- -CACGUCCa-UgUACGAGCGAuUCuUCU- -5'
6382 5' -49.8 NC_001847.1 + 78400 0.71 0.903001
Target:  5'- cUGCAGGUACAgcuuggccaGCUCGUUGcugagcaucggccGGAAGGc -3'
miRNA:   3'- cACGUCCAUGUa--------CGAGCGAU-------------UCUUCU- -5'
6382 5' -49.8 NC_001847.1 + 133304 0.73 0.824163
Target:  5'- -cGCAGaGUGCGUGC-CGCUGuuGGAGGu -3'
miRNA:   3'- caCGUC-CAUGUACGaGCGAU--UCUUCu -5'
6382 5' -49.8 NC_001847.1 + 105187 1.1 0.00751
Target:  5'- cGUGCAGGUACAUGCUCGCUAAGAAGAc -3'
miRNA:   3'- -CACGUCCAUGUACGAGCGAUUCUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.