miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 98583 0.66 0.984408
Target:  5'- aGGUAGGcGCGCGG-CGccAGCGCGUc-- -3'
miRNA:   3'- -CCGUCCaCGUGCUaGC--UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 74740 0.66 0.980274
Target:  5'- cGGCGcuUGCGCGcgCGAGCAUg---- -3'
miRNA:   3'- -CCGUccACGUGCuaGCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 56368 0.66 0.980274
Target:  5'- cGCGGGcgGCACGAccUCG-GCGCucgggUCg -3'
miRNA:   3'- cCGUCCa-CGUGCU--AGCuCGUGuaa--AG- -5'
6383 5' -51.2 NC_001847.1 + 91669 0.66 0.980274
Target:  5'- cGGCGGGa-CGCGAUCGcGCGCu---- -3'
miRNA:   3'- -CCGUCCacGUGCUAGCuCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 95266 0.66 0.982432
Target:  5'- -uCGGGgGCGCGAUCGGGgGCGc--- -3'
miRNA:   3'- ccGUCCaCGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 23215 0.66 0.982432
Target:  5'- cGGCAGGUcccuagGUGCaGUCGAGgCGCggUUCc -3'
miRNA:   3'- -CCGUCCA------CGUGcUAGCUC-GUGuaAAG- -5'
6383 5' -51.2 NC_001847.1 + 53234 0.67 0.972612
Target:  5'- -cCAGGUGCGCGAggcCGcAGCucGCGUUUa -3'
miRNA:   3'- ccGUCCACGUGCUa--GC-UCG--UGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 41823 0.67 0.969636
Target:  5'- gGGCGGGcgGCGCGGgucccagggcUgGGGCACGUc-- -3'
miRNA:   3'- -CCGUCCa-CGUGCU----------AgCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 83579 0.67 0.972612
Target:  5'- uGGUAGGcGCccGCGAgccCGAGCACGc--- -3'
miRNA:   3'- -CCGUCCaCG--UGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 22134 0.67 0.977923
Target:  5'- cGGCGGcGUGCugGAgCGcaaauuuguaaAGCACGUg-- -3'
miRNA:   3'- -CCGUC-CACGugCUaGC-----------UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 13828 0.67 0.977923
Target:  5'- cGGCGugugacGGUGCGCGA--GGGCACGc--- -3'
miRNA:   3'- -CCGU------CCACGUGCUagCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 34822 0.67 0.972612
Target:  5'- cGGCAGGccgaccgggcGCugGAggCGAGCGCGc--- -3'
miRNA:   3'- -CCGUCCa---------CGugCUa-GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 37005 0.67 0.969636
Target:  5'- cGGCGGcG-GCGCGcUCGAGCugAc--- -3'
miRNA:   3'- -CCGUC-CaCGUGCuAGCUCGugUaaag -5'
6383 5' -51.2 NC_001847.1 + 36471 0.67 0.977923
Target:  5'- aGCGGGaccUGCACcuGcgCGGGCGCGUggCg -3'
miRNA:   3'- cCGUCC---ACGUG--CuaGCUCGUGUAaaG- -5'
6383 5' -51.2 NC_001847.1 + 97803 0.67 0.975372
Target:  5'- cGCAcGGUcGCGCGcguggccgcGUCGGGCGCGUg-- -3'
miRNA:   3'- cCGU-CCA-CGUGC---------UAGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 38503 0.67 0.972612
Target:  5'- cGGgGGGcgGCGCGGUCGccGGCGCu---- -3'
miRNA:   3'- -CCgUCCa-CGUGCUAGC--UCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 99380 0.67 0.969636
Target:  5'- aGCGGGUGCGaguCGAUgauaGAGCGCGc--- -3'
miRNA:   3'- cCGUCCACGU---GCUAg---CUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 30368 0.67 0.977923
Target:  5'- uGGCGGGccacucgGCGCuGGUgCGGGCGCAg--- -3'
miRNA:   3'- -CCGUCCa------CGUG-CUA-GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 103366 0.67 0.972034
Target:  5'- aGGCAGGccguguuggccgGCGCGcgCGGGUGCAc--- -3'
miRNA:   3'- -CCGUCCa-----------CGUGCuaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 121693 0.67 0.972612
Target:  5'- aGCAGGUGCGCGccCGcuagauacagccAGCGCAg--- -3'
miRNA:   3'- cCGUCCACGUGCuaGC------------UCGUGUaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.