Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 86018 | 0.7 | 0.914959 |
Target: 5'- aGGCGGG-GCGCGGcggGAGCGCGa--- -3' miRNA: 3'- -CCGUCCaCGUGCUag-CUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 52288 | 0.7 | 0.914959 |
Target: 5'- cGGCuuuGuGUGCGCGAccgCGGGCGCGg--- -3' miRNA: 3'- -CCGu--C-CACGUGCUa--GCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 106072 | 0.7 | 0.913734 |
Target: 5'- cGGCAGGggcgccggcgccGCGCGGccggCGAGCACGgcgCg -3' miRNA: 3'- -CCGUCCa-----------CGUGCUa---GCUCGUGUaaaG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 70169 | 0.7 | 0.908731 |
Target: 5'- uGCAgacGGUGCugGAuucguUCGAGCGCGg--- -3' miRNA: 3'- cCGU---CCACGugCU-----AGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 14568 | 0.7 | 0.902245 |
Target: 5'- cGCGGGUGCugG--CGGGCGCGc--- -3' miRNA: 3'- cCGUCCACGugCuaGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 18638 | 0.7 | 0.902245 |
Target: 5'- aGGCagAGGUGCuCGG-CGAGCGCGa--- -3' miRNA: 3'- -CCG--UCCACGuGCUaGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 56617 | 0.7 | 0.888513 |
Target: 5'- aGGCcgAGGc-CGCGGUCGAGCGCGUc-- -3' miRNA: 3'- -CCG--UCCacGUGCUAGCUCGUGUAaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 20806 | 0.7 | 0.888513 |
Target: 5'- cGGCGGGUGCuuCGG-CG-GCGC-UUUCg -3' miRNA: 3'- -CCGUCCACGu-GCUaGCuCGUGuAAAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 30336 | 0.7 | 0.902245 |
Target: 5'- cGGCGGGcUGgACGA-CGAGCACc---- -3' miRNA: 3'- -CCGUCC-ACgUGCUaGCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 17152 | 0.7 | 0.888513 |
Target: 5'- gGGCGGGUGgGCGGUUGGcGuCGCGUccUCg -3' miRNA: 3'- -CCGUCCACgUGCUAGCU-C-GUGUAa-AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 16706 | 0.69 | 0.920927 |
Target: 5'- cGGCAGGcGCA-GA-CGAGCACGa--- -3' miRNA: 3'- -CCGUCCaCGUgCUaGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 88397 | 0.69 | 0.920927 |
Target: 5'- cGGCGGGcggGCGCGccGUCGGGUACc---- -3' miRNA: 3'- -CCGUCCa--CGUGC--UAGCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 12558 | 0.69 | 0.93208 |
Target: 5'- cGCAGGUGCGCaa-CGGGCGCc---- -3' miRNA: 3'- cCGUCCACGUGcuaGCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 72219 | 0.69 | 0.937264 |
Target: 5'- aGGCAGG-GCACGccCGGGC-CGUcugUCu -3' miRNA: 3'- -CCGUCCaCGUGCuaGCUCGuGUAa--AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 96640 | 0.69 | 0.937264 |
Target: 5'- cGGCGGGUacgcgucguGCGCGGgggccggCGGGUACGcgUCg -3' miRNA: 3'- -CCGUCCA---------CGUGCUa------GCUCGUGUaaAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 23706 | 0.69 | 0.920927 |
Target: 5'- -aCGGG-GCGCGGUCG-GCGCAgaggUCg -3' miRNA: 3'- ccGUCCaCGUGCUAGCuCGUGUaa--AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 72751 | 0.69 | 0.942188 |
Target: 5'- cGGCGGGUGCGCuaaagacgcGUCGGGCGg----- -3' miRNA: 3'- -CCGUCCACGUGc--------UAGCUCGUguaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 53689 | 0.68 | 0.951265 |
Target: 5'- cGCAagauGUGCGCGcgCGAGCGCGc--- -3' miRNA: 3'- cCGUc---CACGUGCuaGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 70708 | 0.68 | 0.951265 |
Target: 5'- cGGCGGGgGCGCccgcggCGAGCGCGa--- -3' miRNA: 3'- -CCGUCCaCGUGcua---GCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 95786 | 0.68 | 0.951265 |
Target: 5'- cGCGGG-GgGCGGcgCGGGCGCAUUa- -3' miRNA: 3'- cCGUCCaCgUGCUa-GCUCGUGUAAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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