Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 95266 | 0.66 | 0.982432 |
Target: 5'- -uCGGGgGCGCGAUCGGGgGCGc--- -3' miRNA: 3'- ccGUCCaCGUGCUAGCUCgUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 95234 | 0.67 | 0.972612 |
Target: 5'- gGGCgcgaucGGGgGCGCGAUCGGGgGCGc--- -3' miRNA: 3'- -CCG------UCCaCGUGCUAGCUCgUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 95198 | 0.67 | 0.972612 |
Target: 5'- gGGCgcgaucGGGgGCGCGAUCGGGgGCGc--- -3' miRNA: 3'- -CCG------UCCaCGUGCUAGCUCgUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 95167 | 0.78 | 0.485966 |
Target: 5'- uGGCGGGggGCGCGAUCGGGgGCGc--- -3' miRNA: 3'- -CCGUCCa-CGUGCUAGCUCgUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 95098 | 0.74 | 0.70653 |
Target: 5'- uGGCGGGggGCGCGAUUGGGgGCGc--- -3' miRNA: 3'- -CCGUCCa-CGUGCUAGCUCgUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 91669 | 0.66 | 0.980274 |
Target: 5'- cGGCGGGa-CGCGAUCGcGCGCu---- -3' miRNA: 3'- -CCGUCCacGUGCUAGCuCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 90338 | 0.67 | 0.972612 |
Target: 5'- gGGCGcGGUGcCGCGcUCG-GCGC-UUUCg -3' miRNA: 3'- -CCGU-CCAC-GUGCuAGCuCGUGuAAAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 88397 | 0.69 | 0.920927 |
Target: 5'- cGGCGGGcggGCGCGccGUCGGGUACc---- -3' miRNA: 3'- -CCGUCCa--CGUGC--UAGCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 86018 | 0.7 | 0.914959 |
Target: 5'- aGGCGGG-GCGCGGcggGAGCGCGa--- -3' miRNA: 3'- -CCGUCCaCGUGCUag-CUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 85776 | 0.68 | 0.946854 |
Target: 5'- gGGCAgcggccgaugcGGUGCGCGucgagggugCGGGCGCGUg-- -3' miRNA: 3'- -CCGU-----------CCACGUGCua-------GCUCGUGUAaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 83579 | 0.67 | 0.972612 |
Target: 5'- uGGUAGGcGCccGCGAgccCGAGCACGc--- -3' miRNA: 3'- -CCGUCCaCG--UGCUa--GCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 81821 | 0.71 | 0.882008 |
Target: 5'- cGGCGGGgcgcgccgucugucGCccgccgcacuggcgGCGAUCGAGCGCGcgUUCg -3' miRNA: 3'- -CCGUCCa-------------CG--------------UGCUAGCUCGUGUa-AAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 81169 | 0.76 | 0.600075 |
Target: 5'- gGGCGgaagacguGGUGCGCG-UCGAGCACAg--- -3' miRNA: 3'- -CCGU--------CCACGUGCuAGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 80201 | 0.73 | 0.757793 |
Target: 5'- gGGCGGGUGCGCcg-CGaAGCGCAgggCg -3' miRNA: 3'- -CCGUCCACGUGcuaGC-UCGUGUaaaG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 77699 | 0.71 | 0.873792 |
Target: 5'- aGGCGGcGUGCGCGcgCGcGCugGUgcgCg -3' miRNA: 3'- -CCGUC-CACGUGCuaGCuCGugUAaa-G- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 76736 | 0.73 | 0.767723 |
Target: 5'- gGGCGGGgaaGgACGGUCGGGCGCu---- -3' miRNA: 3'- -CCGUCCa--CgUGCUAGCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 74740 | 0.66 | 0.980274 |
Target: 5'- cGGCGcuUGCGCGcgCGAGCAUg---- -3' miRNA: 3'- -CCGUccACGUGCuaGCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 72751 | 0.69 | 0.942188 |
Target: 5'- cGGCGGGUGCGCuaaagacgcGUCGGGCGg----- -3' miRNA: 3'- -CCGUCCACGUGc--------UAGCUCGUguaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 72219 | 0.69 | 0.937264 |
Target: 5'- aGGCAGG-GCACGccCGGGC-CGUcugUCu -3' miRNA: 3'- -CCGUCCaCGUGCuaGCUCGuGUAa--AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 70708 | 0.68 | 0.951265 |
Target: 5'- cGGCGGGgGCGCccgcggCGAGCGCGa--- -3' miRNA: 3'- -CCGUCCaCGUGcua---GCUCGUGUaaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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