miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 22134 0.67 0.977923
Target:  5'- cGGCGGcGUGCugGAgCGcaaauuuguaaAGCACGUg-- -3'
miRNA:   3'- -CCGUC-CACGugCUaGC-----------UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 70169 0.7 0.908731
Target:  5'- uGCAgacGGUGCugGAuucguUCGAGCGCGg--- -3'
miRNA:   3'- cCGU---CCACGugCU-----AGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 22099 0.66 0.989191
Target:  5'- cGGCAGGcGCgccggggGCGAcagCGGGCGCGc--- -3'
miRNA:   3'- -CCGUCCaCG-------UGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 103886 1.11 0.004859
Target:  5'- uGGCAGGUGCACGAUCGAGCACAUUUCc -3'
miRNA:   3'- -CCGUCCACGUGCUAGCUCGUGUAAAG- -5'
6383 5' -51.2 NC_001847.1 + 72751 0.69 0.942188
Target:  5'- cGGCGGGUGCGCuaaagacgcGUCGGGCGg----- -3'
miRNA:   3'- -CCGUCCACGUGc--------UAGCUCGUguaaag -5'
6383 5' -51.2 NC_001847.1 + 41904 0.66 0.986211
Target:  5'- aGGCagAGGUGguCGGcUCgcgGAGCACGUgUUCg -3'
miRNA:   3'- -CCG--UCCACguGCU-AG---CUCGUGUA-AAG- -5'
6383 5' -51.2 NC_001847.1 + 98583 0.66 0.984408
Target:  5'- aGGUAGGcGCGCGG-CGccAGCGCGUc-- -3'
miRNA:   3'- -CCGUCCaCGUGCUaGC--UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 95167 0.78 0.485966
Target:  5'- uGGCGGGggGCGCGAUCGGGgGCGc--- -3'
miRNA:   3'- -CCGUCCa-CGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 61318 0.77 0.55771
Target:  5'- cGCGGGUGCGCGGggcggggCGGGCGCGc--- -3'
miRNA:   3'- cCGUCCACGUGCUa------GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 81169 0.76 0.600075
Target:  5'- gGGCGgaagacguGGUGCGCG-UCGAGCACAg--- -3'
miRNA:   3'- -CCGU--------CCACGUGCuAGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 58387 0.68 0.955424
Target:  5'- aGCGGGUGC-CGG-CGGGCAgCAgcUCu -3'
miRNA:   3'- cCGUCCACGuGCUaGCUCGU-GUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 95786 0.68 0.951265
Target:  5'- cGCGGG-GgGCGGcgCGGGCGCAUUa- -3'
miRNA:   3'- cCGUCCaCgUGCUa-GCUCGUGUAAag -5'
6383 5' -51.2 NC_001847.1 + 70708 0.68 0.951265
Target:  5'- cGGCGGGgGCGCccgcggCGAGCGCGa--- -3'
miRNA:   3'- -CCGUCCaCGUGcua---GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 53689 0.68 0.951265
Target:  5'- cGCAagauGUGCGCGcgCGAGCGCGc--- -3'
miRNA:   3'- cCGUc---CACGUGCuaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 52272 0.68 0.955424
Target:  5'- cGGCGcGcccGCACGggCGAGCACGUg-- -3'
miRNA:   3'- -CCGUcCa--CGUGCuaGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 103366 0.67 0.972034
Target:  5'- aGGCAGGccguguuggccgGCGCGcgCGGGUGCAc--- -3'
miRNA:   3'- -CCGUCCa-----------CGUGCuaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 1422 0.66 0.980274
Target:  5'- gGGCAccgcGGUGCGCGggCccaGGCGCGUg-- -3'
miRNA:   3'- -CCGU----CCACGUGCuaGc--UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 5289 0.66 0.980274
Target:  5'- gGGaCGGGgGUACGG-CGAGCGCGa--- -3'
miRNA:   3'- -CC-GUCCaCGUGCUaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 37068 0.66 0.980274
Target:  5'- cGGCuGGUGCACGcgGUacuggcccgccUGAGCGCGg--- -3'
miRNA:   3'- -CCGuCCACGUGC--UA-----------GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 56368 0.66 0.980274
Target:  5'- cGCGGGcgGCACGAccUCG-GCGCucgggUCg -3'
miRNA:   3'- cCGUCCa-CGUGCU--AGCuCGUGuaa--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.