miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 108102 0.66 0.980274
Target:  5'- gGGaCGGGgGUACGG-CGAGCGCGa--- -3'
miRNA:   3'- -CC-GUCCaCGUGCUaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 74740 0.66 0.980274
Target:  5'- cGGCGcuUGCGCGcgCGAGCAUg---- -3'
miRNA:   3'- -CCGUccACGUGCuaGCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 1422 0.66 0.980274
Target:  5'- gGGCAccgcGGUGCGCGggCccaGGCGCGUg-- -3'
miRNA:   3'- -CCGU----CCACGUGCuaGc--UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 56368 0.66 0.980274
Target:  5'- cGCGGGcgGCACGAccUCG-GCGCucgggUCg -3'
miRNA:   3'- cCGUCCa-CGUGCU--AGCuCGUGuaa--AG- -5'
6383 5' -51.2 NC_001847.1 + 37068 0.66 0.980274
Target:  5'- cGGCuGGUGCACGcgGUacuggcccgccUGAGCGCGg--- -3'
miRNA:   3'- -CCGuCCACGUGC--UA-----------GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 5289 0.66 0.980274
Target:  5'- gGGaCGGGgGUACGG-CGAGCGCGa--- -3'
miRNA:   3'- -CC-GUCCaCGUGCUaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 22134 0.67 0.977923
Target:  5'- cGGCGGcGUGCugGAgCGcaaauuuguaaAGCACGUg-- -3'
miRNA:   3'- -CCGUC-CACGugCUaGC-----------UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 30368 0.67 0.977923
Target:  5'- uGGCGGGccacucgGCGCuGGUgCGGGCGCAg--- -3'
miRNA:   3'- -CCGUCCa------CGUG-CUA-GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 13828 0.67 0.977923
Target:  5'- cGGCGugugacGGUGCGCGA--GGGCACGc--- -3'
miRNA:   3'- -CCGU------CCACGUGCUagCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 61563 0.67 0.977923
Target:  5'- cGGCAcGGUGCGCGAggUGcAGaCACAg--- -3'
miRNA:   3'- -CCGU-CCACGUGCUa-GC-UC-GUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 36471 0.67 0.977923
Target:  5'- aGCGGGaccUGCACcuGcgCGGGCGCGUggCg -3'
miRNA:   3'- cCGUCC---ACGUG--CuaGCUCGUGUAaaG- -5'
6383 5' -51.2 NC_001847.1 + 101096 0.67 0.975372
Target:  5'- cGGCGGG---GCGggCGGGCGCGUUc- -3'
miRNA:   3'- -CCGUCCacgUGCuaGCUCGUGUAAag -5'
6383 5' -51.2 NC_001847.1 + 55046 0.67 0.975372
Target:  5'- cGCAGGUGgcCGCGuUCGucGCGCggUUCa -3'
miRNA:   3'- cCGUCCAC--GUGCuAGCu-CGUGuaAAG- -5'
6383 5' -51.2 NC_001847.1 + 97803 0.67 0.975372
Target:  5'- cGCAcGGUcGCGCGcguggccgcGUCGGGCGCGUg-- -3'
miRNA:   3'- cCGU-CCA-CGUGC---------UAGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 53234 0.67 0.972612
Target:  5'- -cCAGGUGCGCGAggcCGcAGCucGCGUUUa -3'
miRNA:   3'- ccGUCCACGUGCUa--GC-UCG--UGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 83579 0.67 0.972612
Target:  5'- uGGUAGGcGCccGCGAgccCGAGCACGc--- -3'
miRNA:   3'- -CCGUCCaCG--UGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 121693 0.67 0.972612
Target:  5'- aGCAGGUGCGCGccCGcuagauacagccAGCGCAg--- -3'
miRNA:   3'- cCGUCCACGUGCuaGC------------UCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 95234 0.67 0.972612
Target:  5'- gGGCgcgaucGGGgGCGCGAUCGGGgGCGc--- -3'
miRNA:   3'- -CCG------UCCaCGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 34822 0.67 0.972612
Target:  5'- cGGCAGGccgaccgggcGCugGAggCGAGCGCGc--- -3'
miRNA:   3'- -CCGUCCa---------CGugCUa-GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 90338 0.67 0.972612
Target:  5'- gGGCGcGGUGcCGCGcUCG-GCGC-UUUCg -3'
miRNA:   3'- -CCGU-CCAC-GUGCuAGCuCGUGuAAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.