miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6391 3' -57 NC_001847.1 + 59553 0.66 0.825083
Target:  5'- ---gGCUGGUGC-UGGGCCUGGa--- -3'
miRNA:   3'- uagaUGACCACGaACCUGGGCCgagc -5'
6391 3' -57 NC_001847.1 + 120382 0.66 0.8049
Target:  5'- -cCUGCUuGUGCUUGaacggcgagcgcgaGGCCCGGCgcgCGu -3'
miRNA:   3'- uaGAUGAcCACGAAC--------------CUGGGCCGa--GC- -5'
6391 3' -57 NC_001847.1 + 128565 0.67 0.798585
Target:  5'- -cCUuCUGGUuccucuccaaGUUUGGGCCCGGCg-- -3'
miRNA:   3'- uaGAuGACCA----------CGAACCUGGGCCGagc -5'
6391 3' -57 NC_001847.1 + 111074 0.67 0.789433
Target:  5'- -gCUGCcgcGG-GCcUGGGCCCGGCUgCGc -3'
miRNA:   3'- uaGAUGa--CCaCGaACCUGGGCCGA-GC- -5'
6391 3' -57 NC_001847.1 + 57775 0.67 0.780136
Target:  5'- -gCUGCUGGUGCUc--GCCgGGCUgGu -3'
miRNA:   3'- uaGAUGACCACGAaccUGGgCCGAgC- -5'
6391 3' -57 NC_001847.1 + 113436 0.67 0.780136
Target:  5'- -cCUGCUGGcGC-UGGuccUCCGGCUCc -3'
miRNA:   3'- uaGAUGACCaCGaACCu--GGGCCGAGc -5'
6391 3' -57 NC_001847.1 + 10623 0.67 0.780136
Target:  5'- -cCUGCUGGcGC-UGGuccUCCGGCUCc -3'
miRNA:   3'- uaGAUGACCaCGaACCu--GGGCCGAGc -5'
6391 3' -57 NC_001847.1 + 51147 0.67 0.770703
Target:  5'- cUCUcGCUGGcGC-UGGACCCGuaCUCGa -3'
miRNA:   3'- uAGA-UGACCaCGaACCUGGGCc-GAGC- -5'
6391 3' -57 NC_001847.1 + 116362 0.67 0.75147
Target:  5'- ---aGCUGGUGUgcgUGGugCUGGCgCGc -3'
miRNA:   3'- uagaUGACCACGa--ACCugGGCCGaGC- -5'
6391 3' -57 NC_001847.1 + 43040 0.67 0.75147
Target:  5'- cAUCgacauauCUGG-GCUgaUGGGCCCGGaCUCu -3'
miRNA:   3'- -UAGau-----GACCaCGA--ACCUGGGCC-GAGc -5'
6391 3' -57 NC_001847.1 + 123449 0.68 0.731806
Target:  5'- gGUUUGCcGG-GCUUGG-CCCGGCgaCGg -3'
miRNA:   3'- -UAGAUGaCCaCGAACCuGGGCCGa-GC- -5'
6391 3' -57 NC_001847.1 + 99739 0.68 0.691497
Target:  5'- -gCUGCgcgGGUGCgUUGGccgGCCCGGCa-- -3'
miRNA:   3'- uaGAUGa--CCACG-AACC---UGGGCCGagc -5'
6391 3' -57 NC_001847.1 + 14063 0.69 0.68127
Target:  5'- uUCgcgGCcGGUGCUUGGGCC--GCUCGu -3'
miRNA:   3'- uAGa--UGaCCACGAACCUGGgcCGAGC- -5'
6391 3' -57 NC_001847.1 + 70669 0.69 0.660702
Target:  5'- cAUCUGCUGGgGCUggaggGGACCgCgGGCcCGg -3'
miRNA:   3'- -UAGAUGACCaCGAa----CCUGG-G-CCGaGC- -5'
6391 3' -57 NC_001847.1 + 118411 0.69 0.650378
Target:  5'- cUCUGCUGGUGCUgcuguuuucgcUGGugaUCGuGCUCGu -3'
miRNA:   3'- uAGAUGACCACGA-----------ACCug-GGC-CGAGC- -5'
6391 3' -57 NC_001847.1 + 96569 0.7 0.578152
Target:  5'- gGUCUGCUGGccgugUGCcUGGgcGCCCGGCg-- -3'
miRNA:   3'- -UAGAUGACC-----ACGaACC--UGGGCCGagc -5'
6391 3' -57 NC_001847.1 + 36296 0.7 0.578152
Target:  5'- gAUCUGCUGGUGCUgcGGAUgCGcCUCu -3'
miRNA:   3'- -UAGAUGACCACGAa-CCUGgGCcGAGc -5'
6391 3' -57 NC_001847.1 + 49888 0.71 0.55776
Target:  5'- -gCUGCUGcacggcacGUGC-UGGGCCCGGCcgCGg -3'
miRNA:   3'- uaGAUGAC--------CACGaACCUGGGCCGa-GC- -5'
6391 3' -57 NC_001847.1 + 12343 0.78 0.221524
Target:  5'- ---cGCUGGUGagcggUGGGCCUGGCUCGg -3'
miRNA:   3'- uagaUGACCACga---ACCUGGGCCGAGC- -5'
6391 3' -57 NC_001847.1 + 95807 1 0.007419
Target:  5'- -aUUACUGGUGCUUGGACCCGGCUCGg -3'
miRNA:   3'- uaGAUGACCACGAACCUGGGCCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.