miRNA display CGI


Results 41 - 60 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6391 5' -59.3 NC_001847.1 + 42487 0.66 0.714343
Target:  5'- cGGCGcGCCgaAGcGCuGCGGGCgaaaccgCCGGGCg -3'
miRNA:   3'- -CCGUuCGG--UC-CG-UGCCCGa------GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 29325 0.66 0.714343
Target:  5'- aGCGAGCCgcgagcgcgAGuGCGCGGGCggCCGuugaaaacAGCg -3'
miRNA:   3'- cCGUUCGG---------UC-CGUGCCCGa-GGU--------UCGa -5'
6391 5' -59.3 NC_001847.1 + 18857 0.66 0.714343
Target:  5'- gGGUcAGCgGGGCACGcuGCcucgCCGAGCg -3'
miRNA:   3'- -CCGuUCGgUCCGUGCc-CGa---GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 89337 0.66 0.714343
Target:  5'- cGGCAGcucccGCCGGGCuuuGCGcGCUUCgGAGCUg -3'
miRNA:   3'- -CCGUU-----CGGUCCG---UGCcCGAGG-UUCGA- -5'
6391 5' -59.3 NC_001847.1 + 49381 0.66 0.714343
Target:  5'- cGGCcgcuGCCcccGGCguugccgucaugGCGGGCUCCGcGCa -3'
miRNA:   3'- -CCGuu--CGGu--CCG------------UGCCCGAGGUuCGa -5'
6391 5' -59.3 NC_001847.1 + 66220 0.66 0.714343
Target:  5'- cGGC-GGCuCGGGCGCgcgcaaaaGGGCUgcacucuccgggCCGAGCa -3'
miRNA:   3'- -CCGuUCG-GUCCGUG--------CCCGA------------GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 42970 0.66 0.714343
Target:  5'- gGGCGGGCCGccggccGGCcCGGGUUCgCugucGGCg -3'
miRNA:   3'- -CCGUUCGGU------CCGuGCCCGAG-Gu---UCGa -5'
6391 5' -59.3 NC_001847.1 + 30485 0.66 0.714343
Target:  5'- cGCAcgccugGGCCGGGCgcuggACGGGCgcgCCGgacgugAGCg -3'
miRNA:   3'- cCGU------UCGGUCCG-----UGCCCGa--GGU------UCGa -5'
6391 5' -59.3 NC_001847.1 + 48178 0.66 0.714343
Target:  5'- aGCAugGGCguGaaCACGGGCUCgGGGCg -3'
miRNA:   3'- cCGU--UCGguCc-GUGCCCGAGgUUCGa -5'
6391 5' -59.3 NC_001847.1 + 57011 0.66 0.714343
Target:  5'- cGCAGGCCGGcGCGCGcccGCUUUuGGCg -3'
miRNA:   3'- cCGUUCGGUC-CGUGCc--CGAGGuUCGa -5'
6391 5' -59.3 NC_001847.1 + 70802 0.66 0.714343
Target:  5'- cGGCgGGGCCGGG-AgGGGauccgCCGAGCg -3'
miRNA:   3'- -CCG-UUCGGUCCgUgCCCga---GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 69474 0.66 0.714343
Target:  5'- cGGCGgggcuccugcuGGCCGGGCugGcGGCguaCAcGGCg -3'
miRNA:   3'- -CCGU-----------UCGGUCCGugC-CCGag-GU-UCGa -5'
6391 5' -59.3 NC_001847.1 + 117110 0.66 0.714343
Target:  5'- aGGCAuauaAGGCGCGGGCaCC-GGCa -3'
miRNA:   3'- -CCGUucggUCCGUGCCCGaGGuUCGa -5'
6391 5' -59.3 NC_001847.1 + 76058 0.66 0.714343
Target:  5'- aGGCcuacuacCCGGGCGaGGGCgcgccagCCGAGCUg -3'
miRNA:   3'- -CCGuuc----GGUCCGUgCCCGa------GGUUCGA- -5'
6391 5' -59.3 NC_001847.1 + 110113 0.66 0.714343
Target:  5'- uGCAAGCguGGCAUcauggGGGCgCUgAAGCUg -3'
miRNA:   3'- cCGUUCGguCCGUG-----CCCGaGG-UUCGA- -5'
6391 5' -59.3 NC_001847.1 + 82899 0.66 0.714343
Target:  5'- -cCAAGCCGcGGCGCGcGGCgcCCGggGGCUu -3'
miRNA:   3'- ccGUUCGGU-CCGUGC-CCGa-GGU--UCGA- -5'
6391 5' -59.3 NC_001847.1 + 52151 0.66 0.713349
Target:  5'- aGCAAGUacaaCGGcaGCGCGGGCaacaaucgcgucuUCCAGGCg -3'
miRNA:   3'- cCGUUCG----GUC--CGUGCCCG-------------AGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 11975 0.66 0.711358
Target:  5'- aGGCGuGCCGuuGGCGgGGGCUCgCGcaaacccgcuaguuGGCUc -3'
miRNA:   3'- -CCGUuCGGU--CCGUgCCCGAG-GU--------------UCGA- -5'
6391 5' -59.3 NC_001847.1 + 97817 0.66 0.708368
Target:  5'- cGCAcGCCAGcgcugugcucggcgcGCGCGGGCUgCGcGCg -3'
miRNA:   3'- cCGUuCGGUC---------------CGUGCCCGAgGUuCGa -5'
6391 5' -59.3 NC_001847.1 + 98194 0.66 0.704371
Target:  5'- aGGC-AGCCGugcgacGGcCGCGGaGCUCCGGGa- -3'
miRNA:   3'- -CCGuUCGGU------CC-GUGCC-CGAGGUUCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.