miRNA display CGI


Results 21 - 40 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6391 5' -59.3 NC_001847.1 + 22103 0.66 0.724245
Target:  5'- aGGCGcGCCGGGggcgacaGCGGGCgcgCCcuGGGCc -3'
miRNA:   3'- -CCGUuCGGUCCg------UGCCCGa--GG--UUCGa -5'
6391 5' -59.3 NC_001847.1 + 92019 0.66 0.724245
Target:  5'- cGCGGGCCcgcgccgucugcGGGCAccgcCGGcGcCUCCGGGCg -3'
miRNA:   3'- cCGUUCGG------------UCCGU----GCC-C-GAGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 81960 0.66 0.724245
Target:  5'- cGGCGcgccacAGCCGGGuCGCaGcGC-CCGAGCa -3'
miRNA:   3'- -CCGU------UCGGUCC-GUGcC-CGaGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 68836 0.66 0.724245
Target:  5'- gGGCGccgcgaagAGCuCGGGCGCGaGGCggcggcgugcgCCGGGCc -3'
miRNA:   3'- -CCGU--------UCG-GUCCGUGC-CCGa----------GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 57983 0.66 0.724245
Target:  5'- aGGCAGGaCC-GGCGCGguGGCggCgCAGGCg -3'
miRNA:   3'- -CCGUUC-GGuCCGUGC--CCGa-G-GUUCGa -5'
6391 5' -59.3 NC_001847.1 + 35076 0.66 0.724245
Target:  5'- gGGCAagcAGCCAGGCAaucacuCGaGaGCUaagugCCGAGCg -3'
miRNA:   3'- -CCGU---UCGGUCCGU------GC-C-CGA-----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 34971 0.66 0.724245
Target:  5'- cGGCcGGCCAGGCGgccagGGGCaa-GGGCa -3'
miRNA:   3'- -CCGuUCGGUCCGUg----CCCGaggUUCGa -5'
6391 5' -59.3 NC_001847.1 + 131083 0.66 0.723258
Target:  5'- aGGCugAGGCCGGGaCugGGGCcgggaCCAgaaccaaAGCg -3'
miRNA:   3'- -CCG--UUCGGUCC-GugCCCGa----GGU-------UCGa -5'
6391 5' -59.3 NC_001847.1 + 113946 0.66 0.723258
Target:  5'- cGGCGGcgucuccuacgccGCCGGGCGCGucgccgcagaaGcGCUCCAggAGCg -3'
miRNA:   3'- -CCGUU-------------CGGUCCGUGC-----------C-CGAGGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 28270 0.66 0.723258
Target:  5'- aGGCugAGGCCGGGaCugGGGCcgggaCCAgaaccaaAGCg -3'
miRNA:   3'- -CCG--UUCGGUCC-GugCCCGa----GGU-------UCGa -5'
6391 5' -59.3 NC_001847.1 + 10681 0.66 0.721283
Target:  5'- gGGCucGCCcuccggucgcgcccGGGCGCGGcccGCgccggCCAAGCg -3'
miRNA:   3'- -CCGuuCGG--------------UCCGUGCC---CGa----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 113494 0.66 0.721283
Target:  5'- gGGCucGCCcuccggucgcgcccGGGCGCGGcccGCgccggCCAAGCg -3'
miRNA:   3'- -CCGuuCGG--------------UCCGUGCC---CGa----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 22614 0.66 0.719303
Target:  5'- uGGCAAGCgaguggccgcgcaGGGCgcguccggggaggGCGGGCUugccCCGGGCg -3'
miRNA:   3'- -CCGUUCGg------------UCCG-------------UGCCCGA----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 125427 0.66 0.719303
Target:  5'- uGGCAAGCgaguggccgcgcaGGGCgcguccggggaggGCGGGCUugccCCGGGCg -3'
miRNA:   3'- -CCGUUCGg------------UCCG-------------UGCCCGA----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 42970 0.66 0.714343
Target:  5'- gGGCGGGCCGccggccGGCcCGGGUUCgCugucGGCg -3'
miRNA:   3'- -CCGUUCGGU------CCGuGCCCGAG-Gu---UCGa -5'
6391 5' -59.3 NC_001847.1 + 30485 0.66 0.714343
Target:  5'- cGCAcgccugGGCCGGGCgcuggACGGGCgcgCCGgacgugAGCg -3'
miRNA:   3'- cCGU------UCGGUCCG-----UGCCCGa--GGU------UCGa -5'
6391 5' -59.3 NC_001847.1 + 70802 0.66 0.714343
Target:  5'- cGGCgGGGCCGGG-AgGGGauccgCCGAGCg -3'
miRNA:   3'- -CCG-UUCGGUCCgUgCCCga---GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 48178 0.66 0.714343
Target:  5'- aGCAugGGCguGaaCACGGGCUCgGGGCg -3'
miRNA:   3'- cCGU--UCGguCc-GUGCCCGAGgUUCGa -5'
6391 5' -59.3 NC_001847.1 + 110113 0.66 0.714343
Target:  5'- uGCAAGCguGGCAUcauggGGGCgCUgAAGCUg -3'
miRNA:   3'- cCGUUCGguCCGUG-----CCCGaGG-UUCGA- -5'
6391 5' -59.3 NC_001847.1 + 117110 0.66 0.714343
Target:  5'- aGGCAuauaAGGCGCGGGCaCC-GGCa -3'
miRNA:   3'- -CCGUucggUCCGUGCCCGaGGuUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.