miRNA display CGI


Results 21 - 40 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6391 5' -59.3 NC_001847.1 + 1140 0.76 0.210851
Target:  5'- cGGCGGcGCCucGGCGCGcGGCUCCGgcAGCg -3'
miRNA:   3'- -CCGUU-CGGu-CCGUGC-CCGAGGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 29097 0.76 0.210851
Target:  5'- cGGCGAGCaC-GGCGCGGGCggcgCgCGAGCg -3'
miRNA:   3'- -CCGUUCG-GuCCGUGCCCGa---G-GUUCGa -5'
6391 5' -59.3 NC_001847.1 + 124437 0.75 0.232501
Target:  5'- cGGCGcuuGGCC-GGCGCGGGCcgcgcCCGGGCg -3'
miRNA:   3'- -CCGU---UCGGuCCGUGCCCGa----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 21624 0.75 0.232501
Target:  5'- cGGCGcuuGGCC-GGCGCGGGCcgcgcCCGGGCg -3'
miRNA:   3'- -CCGU---UCGGuCCGUGCCCGa----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 49508 0.75 0.232501
Target:  5'- cGGCGccgcuucGCCGGGCGCGGGgCUCCccuGCUu -3'
miRNA:   3'- -CCGUu------CGGUCCGUGCCC-GAGGuu-CGA- -5'
6391 5' -59.3 NC_001847.1 + 81241 0.75 0.238198
Target:  5'- cGGCGGGCCAGGC-UGGGCcugCCGcuGCUu -3'
miRNA:   3'- -CCGUUCGGUCCGuGCCCGa--GGUu-CGA- -5'
6391 5' -59.3 NC_001847.1 + 2146 0.75 0.249942
Target:  5'- aGGCGAgcGCCGGGCGCcaGGGCUCggggaaGAGCg -3'
miRNA:   3'- -CCGUU--CGGUCCGUG--CCCGAGg-----UUCGa -5'
6391 5' -59.3 NC_001847.1 + 58357 0.75 0.249942
Target:  5'- gGGC-GGCCAGGCGCGGGacgucggcCUCguAGCg -3'
miRNA:   3'- -CCGuUCGGUCCGUGCCC--------GAGguUCGa -5'
6391 5' -59.3 NC_001847.1 + 104959 0.75 0.249942
Target:  5'- aGGCGAgcGCCGGGCGCcaGGGCUCggggaaGAGCg -3'
miRNA:   3'- -CCGUU--CGGUCCGUG--CCCGAGg-----UUCGa -5'
6391 5' -59.3 NC_001847.1 + 107884 0.75 0.255992
Target:  5'- cGGCGGGCCGGGaGCGGGCggCAGuGCg -3'
miRNA:   3'- -CCGUUCGGUCCgUGCCCGagGUU-CGa -5'
6391 5' -59.3 NC_001847.1 + 109260 0.75 0.255992
Target:  5'- aGCGGGUcggCAGGgGCGGGCUgCAAGCg -3'
miRNA:   3'- cCGUUCG---GUCCgUGCCCGAgGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 121175 0.75 0.255992
Target:  5'- uGCcGGCCAGGgGCGGGCUCgccaCGGGCc -3'
miRNA:   3'- cCGuUCGGUCCgUGCCCGAG----GUUCGa -5'
6391 5' -59.3 NC_001847.1 + 5071 0.75 0.255992
Target:  5'- cGGCGGGCCGGGaGCGGGCggCAGuGCg -3'
miRNA:   3'- -CCGUUCGGUCCgUGCCCGagGUU-CGa -5'
6391 5' -59.3 NC_001847.1 + 124707 0.75 0.262161
Target:  5'- aGGgGAGCCGGGCGCGGGggCgGcAGCg -3'
miRNA:   3'- -CCgUUCGGUCCGUGCCCgaGgU-UCGa -5'
6391 5' -59.3 NC_001847.1 + 23178 0.75 0.262161
Target:  5'- gGGCuGGGCUGGGCugGGGUgggCUggGCUa -3'
miRNA:   3'- -CCG-UUCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 22968 0.75 0.262161
Target:  5'- gGGCuGGGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCG-UUCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 23038 0.75 0.262161
Target:  5'- gGGCuGGGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCG-UUCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 22909 0.75 0.262161
Target:  5'- uGGCuGGGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCG-UUCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 23138 0.75 0.262161
Target:  5'- gGGCuGGGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCG-UUCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 12303 0.75 0.262161
Target:  5'- -aCAAGCCAGgGCGCGGGC-CCGgugGGCg -3'
miRNA:   3'- ccGUUCGGUC-CGUGCCCGaGGU---UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.