miRNA display CGI


Results 21 - 40 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6391 5' -59.3 NC_001847.1 + 5071 0.75 0.255992
Target:  5'- cGGCGGGCCGGGaGCGGGCggCAGuGCg -3'
miRNA:   3'- -CCGUUCGGUCCgUGCCCGagGUU-CGa -5'
6391 5' -59.3 NC_001847.1 + 5361 0.73 0.323177
Target:  5'- cGGCGcGGCCGGGCcCaGGCUCC-GGCg -3'
miRNA:   3'- -CCGU-UCGGUCCGuGcCCGAGGuUCGa -5'
6391 5' -59.3 NC_001847.1 + 6064 0.68 0.612939
Target:  5'- aGCAAGCagggAGGCGCGGcaauuGUgUCCAGGCUc -3'
miRNA:   3'- cCGUUCGg---UCCGUGCC-----CG-AGGUUCGA- -5'
6391 5' -59.3 NC_001847.1 + 6158 0.67 0.643574
Target:  5'- aGCGAGCagggAGGCGCGGcaauuGUgUCCAGGCUc -3'
miRNA:   3'- cCGUUCGg---UCCGUGCC-----CG-AGGUUCGA- -5'
6391 5' -59.3 NC_001847.1 + 6690 0.77 0.17714
Target:  5'- cGGCcGGCCGGGCGCGcGCgcagggCCGAGCg -3'
miRNA:   3'- -CCGuUCGGUCCGUGCcCGa-----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 6950 0.74 0.27486
Target:  5'- -aCGGGCCAGGCGCGGGgUCgCGgcGGCg -3'
miRNA:   3'- ccGUUCGGUCCGUGCCCgAG-GU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 7113 0.7 0.446792
Target:  5'- aGGC--GCCAcGGC-CGGGCUCCuccuGGCc -3'
miRNA:   3'- -CCGuuCGGU-CCGuGCCCGAGGu---UCGa -5'
6391 5' -59.3 NC_001847.1 + 7296 0.67 0.633361
Target:  5'- -aCGAGCCGcuGGCGCGGcGC-CUGAGCg -3'
miRNA:   3'- ccGUUCGGU--CCGUGCC-CGaGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 7720 0.67 0.670066
Target:  5'- gGGCAuucaGGCgcaGGGCGCGGGCgcggaggcggcggCCAgGGCa -3'
miRNA:   3'- -CCGU----UCGg--UCCGUGCCCGa------------GGU-UCGa -5'
6391 5' -59.3 NC_001847.1 + 8110 0.73 0.323177
Target:  5'- cGGCGccAGCgCAGGCGCgGGGCcCCAggGGCg -3'
miRNA:   3'- -CCGU--UCG-GUCCGUG-CCCGaGGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 8466 0.7 0.474524
Target:  5'- cGGCGccgGGCCGGGgGCGGcGCUCgGccgggGGCg -3'
miRNA:   3'- -CCGU---UCGGUCCgUGCC-CGAGgU-----UCGa -5'
6391 5' -59.3 NC_001847.1 + 8586 0.67 0.633361
Target:  5'- aGGCAAaucaggccccGCCAGGgGCGGcGCUCgGccgggGGCg -3'
miRNA:   3'- -CCGUU----------CGGUCCgUGCC-CGAGgU-----UCGa -5'
6391 5' -59.3 NC_001847.1 + 9711 0.73 0.338097
Target:  5'- cGGCcAGCCAcGCGCGGGUccUCCGgcGGCg -3'
miRNA:   3'- -CCGuUCGGUcCGUGCCCG--AGGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 10681 0.66 0.721283
Target:  5'- gGGCucGCCcuccggucgcgcccGGGCGCGGcccGCgccggCCAAGCg -3'
miRNA:   3'- -CCGuuCGG--------------UCCGUGCC---CGa----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 10864 0.79 0.133812
Target:  5'- aGGCGcGgCGGGCGCGGGCgcCCAGGCa -3'
miRNA:   3'- -CCGUuCgGUCCGUGCCCGa-GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 10932 0.66 0.684254
Target:  5'- aGGCGAGCCGgcuGGCGCG-GCUggCCuuuGCg -3'
miRNA:   3'- -CCGUUCGGU---CCGUGCcCGA--GGuu-CGa -5'
6391 5' -59.3 NC_001847.1 + 11012 0.67 0.623147
Target:  5'- aGCAgAGCCAGGCGCaGGGCgugUUCGuuucGCUg -3'
miRNA:   3'- cCGU-UCGGUCCGUG-CCCG---AGGUu---CGA- -5'
6391 5' -59.3 NC_001847.1 + 11975 0.66 0.711358
Target:  5'- aGGCGuGCCGuuGGCGgGGGCUCgCGcaaacccgcuaguuGGCUc -3'
miRNA:   3'- -CCGUuCGGU--CCGUgCCCGAG-GU--------------UCGA- -5'
6391 5' -59.3 NC_001847.1 + 12164 0.66 0.684254
Target:  5'- cGGCAAGCUGGuGUauACGGGC-CCGaaggGGUUg -3'
miRNA:   3'- -CCGUUCGGUC-CG--UGCCCGaGGU----UCGA- -5'
6391 5' -59.3 NC_001847.1 + 12303 0.75 0.262161
Target:  5'- -aCAAGCCAGgGCGCGGGC-CCGgugGGCg -3'
miRNA:   3'- ccGUUCGGUC-CGUGCCCGaGGU---UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.