miRNA display CGI


Results 1 - 20 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6391 5' -59.3 NC_001847.1 + 75 0.72 0.394176
Target:  5'- cGGCGGGcCCGGGCccgcucUGGGCUCCGccccuggguccGGCg -3'
miRNA:   3'- -CCGUUC-GGUCCGu-----GCCCGAGGU-----------UCGa -5'
6391 5' -59.3 NC_001847.1 + 1059 0.67 0.643574
Target:  5'- aGCAAGCgGcGGCGcCGGGCUgUucGCUg -3'
miRNA:   3'- cCGUUCGgU-CCGU-GCCCGAgGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 1140 0.76 0.210851
Target:  5'- cGGCGGcGCCucGGCGCGcGGCUCCGgcAGCg -3'
miRNA:   3'- -CCGUU-CGGu-CCGUGC-CCGAGGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 1200 0.68 0.572325
Target:  5'- cGGCAGcucGUCGGGCGCcaGCUCCAGcGCg -3'
miRNA:   3'- -CCGUU---CGGUCCGUGccCGAGGUU-CGa -5'
6391 5' -59.3 NC_001847.1 + 1238 0.74 0.288048
Target:  5'- cGCAGGCCAGGUacaccggccgcaGCGGcGCgCCGAGCc -3'
miRNA:   3'- cCGUUCGGUCCG------------UGCC-CGaGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 1416 0.73 0.308753
Target:  5'- cGGCAcgGGCaccgCGGuGCGCGGGC-CCAGGCg -3'
miRNA:   3'- -CCGU--UCG----GUC-CGUGCCCGaGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 1931 0.7 0.493483
Target:  5'- aGGCuuAGCCGGcGCGCGGcgcagaGCUCCuccAGCg -3'
miRNA:   3'- -CCGu-UCGGUC-CGUGCC------CGAGGu--UCGa -5'
6391 5' -59.3 NC_001847.1 + 2146 0.75 0.249942
Target:  5'- aGGCGAgcGCCGGGCGCcaGGGCUCggggaaGAGCg -3'
miRNA:   3'- -CCGUU--CGGUCCGUG--CCCGAGg-----UUCGa -5'
6391 5' -59.3 NC_001847.1 + 2234 0.72 0.375914
Target:  5'- cGCGGcGCUGGGCGCGGGCgugugguaguccCCGGGCg -3'
miRNA:   3'- cCGUU-CGGUCCGUGCCCGa-----------GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 2296 0.7 0.493483
Target:  5'- cGGCgGGGCCGccgggcGGCAUGGGC-CCcAGCa -3'
miRNA:   3'- -CCG-UUCGGU------CCGUGCCCGaGGuUCGa -5'
6391 5' -59.3 NC_001847.1 + 2558 0.71 0.43775
Target:  5'- cGGCGGGCUGucuucGGCGCGGGCgCCu-GCg -3'
miRNA:   3'- -CCGUUCGGU-----CCGUGCCCGaGGuuCGa -5'
6391 5' -59.3 NC_001847.1 + 3045 0.71 0.411269
Target:  5'- cGGCGGcCCGGaGCACGcGCUCCGGGUg -3'
miRNA:   3'- -CCGUUcGGUC-CGUGCcCGAGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 3306 0.73 0.315903
Target:  5'- cGGCGAGCgC-GGCGCGGGCgccgcugCCGccGGCg -3'
miRNA:   3'- -CCGUUCG-GuCCGUGCCCGa------GGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 3428 0.67 0.673112
Target:  5'- gGGC--GCCAGGCGCagcccagGGGgUCgAGGCg -3'
miRNA:   3'- -CCGuuCGGUCCGUG-------CCCgAGgUUCGa -5'
6391 5' -59.3 NC_001847.1 + 3803 0.69 0.542283
Target:  5'- cGCAcgcGGCCGGGCggcgGCGGcGCgcugCCGGGCc -3'
miRNA:   3'- cCGU---UCGGUCCG----UGCC-CGa---GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 3804 0.68 0.602746
Target:  5'- cGGCGuGCC-GGCACgGGGCgucggCCGcgAGCg -3'
miRNA:   3'- -CCGUuCGGuCCGUG-CCCGa----GGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 3903 0.7 0.446792
Target:  5'- cGGCGuAGCCA-GCGCGGGCgCCGguuGCg -3'
miRNA:   3'- -CCGU-UCGGUcCGUGCCCGaGGUu--CGa -5'
6391 5' -59.3 NC_001847.1 + 3979 0.74 0.288048
Target:  5'- gGGCGccgggGGCCGGGCGCGcGGCcCCGcggGGCg -3'
miRNA:   3'- -CCGU-----UCGGUCCGUGC-CCGaGGU---UCGa -5'
6391 5' -59.3 NC_001847.1 + 4616 0.73 0.330575
Target:  5'- cGGCcAGCUcGGCGCGGGCggcCCGccGGCg -3'
miRNA:   3'- -CCGuUCGGuCCGUGCCCGa--GGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 4848 0.66 0.714343
Target:  5'- cGGCGAuaauguauggcGCCGGG-ACGGGCacagCCAcGCg -3'
miRNA:   3'- -CCGUU-----------CGGUCCgUGCCCGa---GGUuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.