miRNA display CGI


Results 1 - 20 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6391 5' -59.3 NC_001847.1 + 58587 0.66 0.734068
Target:  5'- aGCGGGCCGcuuuGcGCGCGGGCUCgccuUucGCUa -3'
miRNA:   3'- cCGUUCGGU----C-CGUGCCCGAG----GuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 22103 0.66 0.724245
Target:  5'- aGGCGcGCCGGGggcgacaGCGGGCgcgCCcuGGGCc -3'
miRNA:   3'- -CCGUuCGGUCCg------UGCCCGa--GG--UUCGa -5'
6391 5' -59.3 NC_001847.1 + 113946 0.66 0.723258
Target:  5'- cGGCGGcgucuccuacgccGCCGGGCGCGucgccgcagaaGcGCUCCAggAGCg -3'
miRNA:   3'- -CCGUU-------------CGGUCCGUGC-----------C-CGAGGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 28270 0.66 0.723258
Target:  5'- aGGCugAGGCCGGGaCugGGGCcgggaCCAgaaccaaAGCg -3'
miRNA:   3'- -CCG--UUCGGUCC-GugCCCGa----GGU-------UCGa -5'
6391 5' -59.3 NC_001847.1 + 10681 0.66 0.721283
Target:  5'- gGGCucGCCcuccggucgcgcccGGGCGCGGcccGCgccggCCAAGCg -3'
miRNA:   3'- -CCGuuCGG--------------UCCGUGCC---CGa----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 22614 0.66 0.719303
Target:  5'- uGGCAAGCgaguggccgcgcaGGGCgcguccggggaggGCGGGCUugccCCGGGCg -3'
miRNA:   3'- -CCGUUCGg------------UCCG-------------UGCCCGA----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 110113 0.66 0.714343
Target:  5'- uGCAAGCguGGCAUcauggGGGCgCUgAAGCUg -3'
miRNA:   3'- cCGUUCGguCCGUG-----CCCGaGG-UUCGA- -5'
6391 5' -59.3 NC_001847.1 + 76058 0.66 0.714343
Target:  5'- aGGCcuacuacCCGGGCGaGGGCgcgccagCCGAGCUg -3'
miRNA:   3'- -CCGuuc----GGUCCGUgCCCGa------GGUUCGA- -5'
6391 5' -59.3 NC_001847.1 + 57011 0.66 0.714343
Target:  5'- cGCAGGCCGGcGCGCGcccGCUUUuGGCg -3'
miRNA:   3'- cCGUUCGGUC-CGUGCc--CGAGGuUCGa -5'
6391 5' -59.3 NC_001847.1 + 34971 0.66 0.724245
Target:  5'- cGGCcGGCCAGGCGgccagGGGCaa-GGGCa -3'
miRNA:   3'- -CCGuUCGGUCCGUg----CCCGaggUUCGa -5'
6391 5' -59.3 NC_001847.1 + 35076 0.66 0.724245
Target:  5'- gGGCAagcAGCCAGGCAaucacuCGaGaGCUaagugCCGAGCg -3'
miRNA:   3'- -CCGU---UCGGUCCGU------GC-C-CGA-----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 57983 0.66 0.724245
Target:  5'- aGGCAGGaCC-GGCGCGguGGCggCgCAGGCg -3'
miRNA:   3'- -CCGUUC-GGuCCGUGC--CCGa-G-GUUCGa -5'
6391 5' -59.3 NC_001847.1 + 111018 0.66 0.734068
Target:  5'- aGCAAGUUcGcGCGCGGGCUCau-GCc -3'
miRNA:   3'- cCGUUCGGuC-CGUGCCCGAGguuCGa -5'
6391 5' -59.3 NC_001847.1 + 104420 0.66 0.734068
Target:  5'- aGUcGGCCAcguccGCGCGGGCgUCCAggAGCg -3'
miRNA:   3'- cCGuUCGGUc----CGUGCCCG-AGGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 16698 0.66 0.734068
Target:  5'- gGGCGAGCC-GGCA-GGcGCagaCGAGCa -3'
miRNA:   3'- -CCGUUCGGuCCGUgCC-CGag-GUUCGa -5'
6391 5' -59.3 NC_001847.1 + 85612 0.66 0.73309
Target:  5'- aGGCGcuaaAGCCAaagcgccGGCGCGcuuGCUCgCAGGCg -3'
miRNA:   3'- -CCGU----UCGGU-------CCGUGCc--CGAG-GUUCGa -5'
6391 5' -59.3 NC_001847.1 + 86967 0.66 0.728184
Target:  5'- cGGCAcagcaggacgccgccGGCCGGGC-CGGcGCgcgCCGgcccGGCg -3'
miRNA:   3'- -CCGU---------------UCGGUCCGuGCC-CGa--GGU----UCGa -5'
6391 5' -59.3 NC_001847.1 + 92019 0.66 0.724245
Target:  5'- cGCGGGCCcgcgccgucugcGGGCAccgcCGGcGcCUCCGGGCg -3'
miRNA:   3'- cCGUUCGG------------UCCGU----GCC-C-GAGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 81960 0.66 0.724245
Target:  5'- cGGCGcgccacAGCCGGGuCGCaGcGC-CCGAGCa -3'
miRNA:   3'- -CCGU------UCGGUCC-GUGcC-CGaGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 68836 0.66 0.724245
Target:  5'- gGGCGccgcgaagAGCuCGGGCGCGaGGCggcggcgugcgCCGGGCc -3'
miRNA:   3'- -CCGU--------UCG-GUCCGUGC-CCGa----------GGUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.