miRNA display CGI


Results 1 - 20 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6391 5' -59.3 NC_001847.1 + 124597 0.82 0.079132
Target:  5'- cGGCGccGGCCGGGCGCGGGUccCCGGGCc -3'
miRNA:   3'- -CCGU--UCGGUCCGUGCCCGa-GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 125851 0.75 0.262161
Target:  5'- gGGCuGGGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCG-UUCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 125991 0.75 0.262161
Target:  5'- gGGCuGGGCUGGGCugGGGUgggCUggGCUa -3'
miRNA:   3'- -CCG-UUCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 58587 0.66 0.734068
Target:  5'- aGCGGGCCGcuuuGcGCGCGGGCUCgccuUucGCUa -3'
miRNA:   3'- cCGUUCGGU----C-CGUGCCCGAG----GuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 66062 0.77 0.172735
Target:  5'- cGGCGGcGCCGGGggcgaCGCGGGCUuuGAGCUg -3'
miRNA:   3'- -CCGUU-CGGUCC-----GUGCCCGAggUUCGA- -5'
6391 5' -59.3 NC_001847.1 + 6690 0.77 0.17714
Target:  5'- cGGCcGGCCGGGCGCGcGCgcagggCCGAGCg -3'
miRNA:   3'- -CCGuUCGGUCCGUGCcCGa-----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 125917 0.77 0.181645
Target:  5'- gGGUggGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCGuuCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 129302 0.77 0.19096
Target:  5'- gGGCGGGCCuGGUgcaagGCGGGCcugCCGGGCg -3'
miRNA:   3'- -CCGUUCGGuCCG-----UGCCCGa--GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 131910 0.76 0.210851
Target:  5'- cGGCGAGCaC-GGCGCGGGCggcgCgCGAGCg -3'
miRNA:   3'- -CCGUUCG-GuCCGUGCCCGa---G-GUUCGa -5'
6391 5' -59.3 NC_001847.1 + 125781 0.75 0.262161
Target:  5'- gGGCuGGGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCG-UUCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 81241 0.75 0.238198
Target:  5'- cGGCGGGCCAGGC-UGGGCcugCCGcuGCUu -3'
miRNA:   3'- -CCGUUCGGUCCGuGCCCGa--GGUu-CGA- -5'
6391 5' -59.3 NC_001847.1 + 103953 0.76 0.210851
Target:  5'- cGGCGGcGCCucGGCGCGcGGCUCCGgcAGCg -3'
miRNA:   3'- -CCGUU-CGGu-CCGUGC-CCGAGGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 66335 0.79 0.130397
Target:  5'- cGGCGGGUgGGGCGCGGGCgccgCCGuGGCg -3'
miRNA:   3'- -CCGUUCGgUCCGUGCCCGa---GGU-UCGa -5'
6391 5' -59.3 NC_001847.1 + 104959 0.75 0.249942
Target:  5'- aGGCGAgcGCCGGGCGCcaGGGCUCggggaaGAGCg -3'
miRNA:   3'- -CCGUU--CGGUCCGUG--CCCGAGg-----UUCGa -5'
6391 5' -59.3 NC_001847.1 + 10864 0.79 0.133812
Target:  5'- aGGCGcGgCGGGCGCGGGCgcCCAGGCa -3'
miRNA:   3'- -CCGUuCgGUCCGUGCCCGa-GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 33534 0.76 0.210851
Target:  5'- aGGC--GCCGGGCGCGGGCgCCGaagaGGCg -3'
miRNA:   3'- -CCGuuCGGUCCGUGCCCGaGGU----UCGa -5'
6391 5' -59.3 NC_001847.1 + 107884 0.75 0.255992
Target:  5'- cGGCGGGCCGGGaGCGGGCggCAGuGCg -3'
miRNA:   3'- -CCGUUCGGUCCgUGCCCGagGUU-CGa -5'
6391 5' -59.3 NC_001847.1 + 125951 0.75 0.262161
Target:  5'- gGGCuGGGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCG-UUCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 77459 0.78 0.164217
Target:  5'- cGGCGGGCUGGG-GCGGGCgCCGGGCg -3'
miRNA:   3'- -CCGUUCGGUCCgUGCCCGaGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 125887 0.77 0.181645
Target:  5'- gGGUggGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCGuuCGGUCCGugCCCGa--GGuuCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.