miRNA display CGI


Results 1 - 20 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6391 5' -59.3 NC_001847.1 + 95839 1.09 0.000969
Target:  5'- gGGCAAGCCAGGCACGGGCUCCAAGCUa -3'
miRNA:   3'- -CCGUUCGGUCCGUGCCCGAGGUUCGA- -5'
6391 5' -59.3 NC_001847.1 + 46921 0.83 0.075022
Target:  5'- gGGCGcGUCGGGCcCGGGCUCCGGGCc -3'
miRNA:   3'- -CCGUuCGGUCCGuGCCCGAGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 124597 0.82 0.079132
Target:  5'- cGGCGccGGCCGGGCGCGGGUccCCGGGCc -3'
miRNA:   3'- -CCGU--UCGGUCCGUGCCCGa-GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 21784 0.82 0.079132
Target:  5'- cGGCGccGGCCGGGCGCGGGUccCCGGGCc -3'
miRNA:   3'- -CCGU--UCGGUCCGUGCCCGa-GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 57667 0.82 0.083457
Target:  5'- cGGCGGGCCGGGC-CGGGCgCCcGGCg -3'
miRNA:   3'- -CCGUUCGGUCCGuGCCCGaGGuUCGa -5'
6391 5' -59.3 NC_001847.1 + 66335 0.79 0.130397
Target:  5'- cGGCGGGUgGGGCGCGGGCgccgCCGuGGCg -3'
miRNA:   3'- -CCGUUCGgUCCGUGCCCGa---GGU-UCGa -5'
6391 5' -59.3 NC_001847.1 + 10864 0.79 0.133812
Target:  5'- aGGCGcGgCGGGCGCGGGCgcCCAGGCa -3'
miRNA:   3'- -CCGUuCgGUCCGUGCCCGa-GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 77459 0.78 0.164217
Target:  5'- cGGCGGGCUGGG-GCGGGCgCCGGGCg -3'
miRNA:   3'- -CCGUUCGGUCCgUGCCCGaGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 66062 0.77 0.172735
Target:  5'- cGGCGGcGCCGGGggcgaCGCGGGCUuuGAGCUg -3'
miRNA:   3'- -CCGUU-CGGUCC-----GUGCCCGAggUUCGA- -5'
6391 5' -59.3 NC_001847.1 + 6690 0.77 0.17714
Target:  5'- cGGCcGGCCGGGCGCGcGCgcagggCCGAGCg -3'
miRNA:   3'- -CCGuUCGGUCCGUGCcCGa-----GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 125887 0.77 0.181645
Target:  5'- gGGUggGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCGuuCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 23074 0.77 0.181645
Target:  5'- gGGUggGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCGuuCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 125917 0.77 0.181645
Target:  5'- gGGUggGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCGuuCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 23104 0.77 0.181645
Target:  5'- gGGUggGCUGGGCugGGGUgggCUggGCUg -3'
miRNA:   3'- -CCGuuCGGUCCGugCCCGa--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 26489 0.77 0.19096
Target:  5'- gGGCGGGCCuGGUgcaagGCGGGCcugCCGGGCg -3'
miRNA:   3'- -CCGUUCGGuCCG-----UGCCCGa--GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 129302 0.77 0.19096
Target:  5'- gGGCGGGCCuGGUgcaagGCGGGCcugCCGGGCg -3'
miRNA:   3'- -CCGUUCGGuCCG-----UGCCCGa--GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 100010 0.76 0.203693
Target:  5'- uGGCGAGCCgAGGCACGGccgccaggucgccCUCCAGGUa -3'
miRNA:   3'- -CCGUUCGG-UCCGUGCCc------------GAGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 33534 0.76 0.210851
Target:  5'- aGGC--GCCGGGCGCGGGCgCCGaagaGGCg -3'
miRNA:   3'- -CCGuuCGGUCCGUGCCCGaGGU----UCGa -5'
6391 5' -59.3 NC_001847.1 + 1140 0.76 0.210851
Target:  5'- cGGCGGcGCCucGGCGCGcGGCUCCGgcAGCg -3'
miRNA:   3'- -CCGUU-CGGu-CCGUGC-CCGAGGU--UCGa -5'
6391 5' -59.3 NC_001847.1 + 29097 0.76 0.210851
Target:  5'- cGGCGAGCaC-GGCGCGGGCggcgCgCGAGCg -3'
miRNA:   3'- -CCGUUCG-GuCCGUGCCCGa---G-GUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.