miRNA display CGI


Results 1 - 20 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6391 5' -59.3 NC_001847.1 + 135007 0.67 0.663965
Target:  5'- cGGCcgGGGCCcgAGGCccGCGGGCggggCCgGGGCg -3'
miRNA:   3'- -CCG--UUCGG--UCCG--UGCCCGa---GG-UUCGa -5'
6391 5' -59.3 NC_001847.1 + 134917 0.72 0.369417
Target:  5'- gGGCGcgaGGcCCGGGCuCGGGCccCCGGGCg -3'
miRNA:   3'- -CCGU---UC-GGUCCGuGCCCGa-GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 134877 0.67 0.633361
Target:  5'- cGGCGGcccCCGGGCuCGGGCcccugggcgCCGGGCg -3'
miRNA:   3'- -CCGUUc--GGUCCGuGCCCGa--------GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 134644 0.74 0.272924
Target:  5'- gGGCGGGCCggcagcaggcgcggAGGCGCGGGCacCCAugacGGCg -3'
miRNA:   3'- -CCGUUCGG--------------UCCGUGCCCGa-GGU----UCGa -5'
6391 5' -59.3 NC_001847.1 + 134393 0.67 0.633361
Target:  5'- uGCAGGCCAGuggUGGGCUCguAGCc -3'
miRNA:   3'- cCGUUCGGUCcguGCCCGAGguUCGa -5'
6391 5' -59.3 NC_001847.1 + 134262 0.69 0.552244
Target:  5'- cGGC-GGCCccGGCGCGGGCcgccgCCGcGCg -3'
miRNA:   3'- -CCGuUCGGu-CCGUGCCCGa----GGUuCGa -5'
6391 5' -59.3 NC_001847.1 + 134197 0.73 0.315903
Target:  5'- cGGCGcAGucguccCCGGGCGCGGGCU-CGGGCUu -3'
miRNA:   3'- -CCGU-UC------GGUCCGUGCCCGAgGUUCGA- -5'
6391 5' -59.3 NC_001847.1 + 133604 0.69 0.503091
Target:  5'- gGGCGGG-CGGGCuuGGGCggcaCAAGCg -3'
miRNA:   3'- -CCGUUCgGUCCGugCCCGag--GUUCGa -5'
6391 5' -59.3 NC_001847.1 + 133298 0.66 0.714343
Target:  5'- cGCAcgccugGGCCGGGCgcuggACGGGCgcgCCGgacgugAGCg -3'
miRNA:   3'- cCGU------UCGGUCCG-----UGCCCGa--GGU------UCGa -5'
6391 5' -59.3 NC_001847.1 + 133173 0.68 0.592575
Target:  5'- uGCuaccuGCgCGGGCGCGGGCUgcCCucGCUg -3'
miRNA:   3'- cCGuu---CG-GUCCGUGCCCGA--GGuuCGA- -5'
6391 5' -59.3 NC_001847.1 + 132451 0.67 0.673112
Target:  5'- cGCAAGCUggaGGGCGCGGaggacgagccgauGCcggCCGAGCc -3'
miRNA:   3'- cCGUUCGG---UCCGUGCC-------------CGa--GGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 132130 0.67 0.622125
Target:  5'- cGGCGcGGCCcgcgacgcgguggAGcGCGCGcGGCUCCAGcGCg -3'
miRNA:   3'- -CCGU-UCGG-------------UC-CGUGC-CCGAGGUU-CGa -5'
6391 5' -59.3 NC_001847.1 + 132090 0.68 0.572325
Target:  5'- cGGCGcacCCGGaGCGCGuGCUCCGGGCc -3'
miRNA:   3'- -CCGUuc-GGUC-CGUGCcCGAGGUUCGa -5'
6391 5' -59.3 NC_001847.1 + 132010 0.68 0.582432
Target:  5'- cGGCGccGCCGGGCuccCGGuGCUCUcGGCc -3'
miRNA:   3'- -CCGUu-CGGUCCGu--GCC-CGAGGuUCGa -5'
6391 5' -59.3 NC_001847.1 + 131910 0.76 0.210851
Target:  5'- cGGCGAGCaC-GGCGCGGGCggcgCgCGAGCg -3'
miRNA:   3'- -CCGUUCG-GuCCGUGCCCGa---G-GUUCGa -5'
6391 5' -59.3 NC_001847.1 + 131083 0.66 0.723258
Target:  5'- aGGCugAGGCCGGGaCugGGGCcgggaCCAgaaccaaAGCg -3'
miRNA:   3'- -CCG--UUCGGUCC-GugCCCGa----GGU-------UCGa -5'
6391 5' -59.3 NC_001847.1 + 130968 0.68 0.592575
Target:  5'- aGCGAcGCCGGGUccgaggacaGCGGGC-CCGAGg- -3'
miRNA:   3'- cCGUU-CGGUCCG---------UGCCCGaGGUUCga -5'
6391 5' -59.3 NC_001847.1 + 130511 0.66 0.694339
Target:  5'- aGGCGcGCgAGcGCcgGCGGGCcgcccgcgCCGAGCUg -3'
miRNA:   3'- -CCGUuCGgUC-CG--UGCCCGa-------GGUUCGA- -5'
6391 5' -59.3 NC_001847.1 + 129351 0.67 0.633361
Target:  5'- cGCAAGCgCGGuGC-CGGGCcCgGGGCUa -3'
miRNA:   3'- cCGUUCG-GUC-CGuGCCCGaGgUUCGA- -5'
6391 5' -59.3 NC_001847.1 + 129302 0.77 0.19096
Target:  5'- gGGCGGGCCuGGUgcaagGCGGGCcugCCGGGCg -3'
miRNA:   3'- -CCGUUCGGuCCG-----UGCCCGa--GGUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.