miRNA display CGI

Results 1 - 20 of 1656 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6395	5'	-62.6	NC_001847.1	+	92704	1.09	0.0006
	Target:  5'- cUGCCCACGAGCGCGCGCCAUCGCCGCc -3' miRNA:   3'- -ACGGGUGCUCGCGCGCGGUAGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	56829	0.93	0.009212
	Target:  5'- gGCCCGCGGcGCGCGCGCCG-CGCCGCg -3' miRNA:   3'- aCGGGUGCU-CGCGCGCGGUaGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	116334	0.88	0.020483
	Target:  5'- gUGCCCAUGcgcgcgcuGGCGCGCGCCGcCGCCGCg -3' miRNA:   3'- -ACGGGUGC--------UCGCGCGCGGUaGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	24319	0.87	0.024017
	Target:  5'- aUGCCCAgCGAGCggugGCGCGCCA-CGCCGCg -3' miRNA:   3'- -ACGGGU-GCUCG----CGCGCGGUaGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	116525	0.86	0.032127
	Target:  5'- cUGCCUGCGcuacGCGCGCGCCGaCGCCGCg -3' miRNA:   3'- -ACGGGUGCu---CGCGCGCGGUaGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	1562	0.85	0.0357
	Target:  5'- cGCgCCGCGAggccagcacgGCGCGCGCCAgcgCGCCGCu -3' miRNA:   3'- aCG-GGUGCU----------CGCGCGCGGUa--GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	104375	0.85	0.0357
	Target:  5'- cGCgCCGCGAggccagcacgGCGCGCGCCAgcgCGCCGCu -3' miRNA:   3'- aCG-GGUGCU----------CGCGCGCGGUa--GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	43141	0.84	0.040719
	Target:  5'- gGCCCGCGGGCGCuGCGCCcgCaGUCGCu -3' miRNA:   3'- aCGGGUGCUCGCG-CGCGGuaG-CGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	27444	0.84	0.044055
	Target:  5'- cGCCCGCGAGCGC-CGCCAaccgcaggCGCCGUc -3' miRNA:   3'- aCGGGUGCUCGCGcGCGGUa-------GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	104713	0.84	0.045226
	Target:  5'- aGCgCCGCGAGCGCGUGCgAgagccCGCCGCg -3' miRNA:   3'- aCG-GGUGCUCGCGCGCGgUa----GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	1900	0.84	0.045226
	Target:  5'- aGCgCCGCGAGCGCGUGCgAgagccCGCCGCg -3' miRNA:   3'- aCG-GGUGCUCGCGCGCGgUa----GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	6109	0.83	0.046305
	Target:  5'- cGCCCGCGAgGCGCggcgcgaGCGCC-UCGCCGCc -3' miRNA:   3'- aCGGGUGCU-CGCG-------CGCGGuAGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	61266	0.83	0.047658
	Target:  5'- cGUCCGCG-GCGCGCGCgGgCGCCGCg -3' miRNA:   3'- aCGGGUGCuCGCGCGCGgUaGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	86091	0.83	0.048794
	Target:  5'- cGCCCGCggccguGAGCuGCGCGCCAccacggcUCGCCGCu -3' miRNA:   3'- aCGGGUG------CUCG-CGCGCGGU-------AGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	93931	0.83	0.051547
	Target:  5'- cUGCgugaUCACGGGCGCGaCGCgCGUCGCCGCg -3' miRNA:   3'- -ACG----GGUGCUCGCGC-GCG-GUAGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	100861	0.83	0.051547
	Target:  5'- cGgCCGCGAGCGCgGCGCCcagcCGCCGCg -3' miRNA:   3'- aCgGGUGCUCGCG-CGCGGua--GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	98128	0.83	0.051547
	Target:  5'- gGUCCGCGGGCgucagcucgaGCGCGCCGcCGCCGCu -3' miRNA:   3'- aCGGGUGCUCG----------CGCGCGGUaGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	54507	0.83	0.052911
	Target:  5'- -uCCCGCGAGCGC-CGCCGUCGCCa- -3' miRNA:   3'- acGGGUGCUCGCGcGCGGUAGCGGcg -5'
6395	5'	-62.6	NC_001847.1	+	121855	0.83	0.052911
	Target:  5'- cGCCCGCGuAGCGCGCGCaCAggGCCGg -3' miRNA:   3'- aCGGGUGC-UCGCGCGCG-GUagCGGCg -5'
6395	5'	-62.6	NC_001847.1	+	41632	0.82	0.05431
	Target:  5'- aUGgCCGCGAGCgGCGCGCCGggggGCCGCg -3' miRNA:   3'- -ACgGGUGCUCG-CGCGCGGUag--CGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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