miRNA display CGI

Results 1 - 20 of 1656 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6395	5'	-62.6	NC_001847.1	+	44	0.68	0.473434
	Target:  5'- -uUCCGCGcGGCGCGUGC-AUUGCgGCg -3' miRNA:   3'- acGGGUGC-UCGCGCGCGgUAGCGgCG- -5'
6395	5'	-62.6	NC_001847.1	+	135	0.69	0.437926
	Target:  5'- cGCCCGCGGGCcuCGgGCCccgGCCGg -3' miRNA:   3'- aCGGGUGCUCGc-GCgCGGuagCGGCg -5'
6395	5'	-62.6	NC_001847.1	+	291	0.78	0.114465
	Target:  5'- aGCCCGC--GCGgGCGCCGUCcCCGCg -3' miRNA:   3'- aCGGGUGcuCGCgCGCGGUAGcGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	371	0.75	0.178824
	Target:  5'- gGCCCGCcc-CGCGCGCCGcgCGCCGg -3' miRNA:   3'- aCGGGUGcucGCGCGCGGUa-GCGGCg -5'
6395	5'	-62.6	NC_001847.1	+	420	0.67	0.519747
	Target:  5'- gGCCCgggGCGGGCGgGCGgCGgcgGCgGCg -3' miRNA:   3'- aCGGG---UGCUCGCgCGCgGUag-CGgCG- -5'
6395	5'	-62.6	NC_001847.1	+	479	0.68	0.464419
	Target:  5'- cGCCguCAUGGGUGCccGCGCCuccgCGCCuGCu -3' miRNA:   3'- aCGG--GUGCUCGCG--CGCGGua--GCGG-CG- -5'
6395	5'	-62.6	NC_001847.1	+	538	0.7	0.363993
	Target:  5'- gUGCCCgACGcggggaacguGGCgGCGgaCGCCAgCGCCGCg -3' miRNA:   3'- -ACGGG-UGC----------UCG-CGC--GCGGUaGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	605	0.71	0.326105
	Target:  5'- cUGCCCgACGA-CGCGCcCCGUguaccaccacaugCGCCGCg -3' miRNA:   3'- -ACGGG-UGCUcGCGCGcGGUA-------------GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	611	0.69	0.403994
	Target:  5'- cGCuCCGCagcGGCGCGCgGCCcgCGCCu- -3' miRNA:   3'- aCG-GGUGc--UCGCGCG-CGGuaGCGGcg -5'
6395	5'	-62.6	NC_001847.1	+	770	0.7	0.363993
	Target:  5'- gGCCCGCcgccGGCG-GCGCCGgccUCGUCGUc -3' miRNA:   3'- aCGGGUGc---UCGCgCGCGGU---AGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	887	0.7	0.363993
	Target:  5'- gGCCCGCGccGGgGC-CGCCGcgGCCGCc -3' miRNA:   3'- aCGGGUGC--UCgCGcGCGGUagCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	940	0.77	0.136425
	Target:  5'- cGCCCuCGGcccGCGCGCGCCGcuccaCGCUGCg -3' miRNA:   3'- aCGGGuGCU---CGCGCGCGGUa----GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	1028	0.69	0.403994
	Target:  5'- cGCCCGCG-GCGCGCcGCagcagcacgagCGUCucCCGCg -3' miRNA:   3'- aCGGGUGCuCGCGCG-CG-----------GUAGc-GGCG- -5'
6395	5'	-62.6	NC_001847.1	+	1048	0.67	0.548377
	Target:  5'- cUGCUCGCcaGAGCaagcgGCgGCGCCGggcuguUCGCUGCu -3' miRNA:   3'- -ACGGGUG--CUCG-----CG-CGCGGU------AGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	1103	0.74	0.201722
	Target:  5'- cGgCCGCGGGCG-GCGCCGcCGCgGCc -3' miRNA:   3'- aCgGGUGCUCGCgCGCGGUaGCGgCG- -5'
6395	5'	-62.6	NC_001847.1	+	1165	0.68	0.464419
	Target:  5'- gGCagCGCGGcCGCGCagaagGCCAcCGCCGCg -3' miRNA:   3'- aCGg-GUGCUcGCGCG-----CGGUaGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	1204	0.69	0.387662
	Target:  5'- aGCUCGuCGGGCGCcaGCuCCAgcgcgCGCCGCc -3' miRNA:   3'- aCGGGU-GCUCGCG--CGcGGUa----GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	1336	0.68	0.473434
	Target:  5'- aGCCC-C-AGCGcCGCGCCcugCGCgGCc -3' miRNA:   3'- aCGGGuGcUCGC-GCGCGGua-GCGgCG- -5'
6395	5'	-62.6	NC_001847.1	+	1350	0.66	0.555131
	Target:  5'- uUGCCUuucuguuucccguuGCGuGCGCGUG-UGUCGCCGa -3' miRNA:   3'- -ACGGG--------------UGCuCGCGCGCgGUAGCGGCg -5'
6395	5'	-62.6	NC_001847.1	+	1372	0.73	0.255184
	Target:  5'- cGCCCGuCGAGCGC-CGgCAgcacgCGCUGCc -3' miRNA:   3'- aCGGGU-GCUCGCGcGCgGUa----GCGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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