miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6411 3' -54.7 NC_001847.1 + 31379 0.66 0.92924
Target:  5'- gGUGcCGGCGC--AGUcgUCCCCGgGCGCGg -3'
miRNA:   3'- -CAU-GCUGCGcaUCA--AGGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 31441 0.71 0.688661
Target:  5'- -gGCGGcCGCGgcGg-CCCCGGCGCGg -3'
miRNA:   3'- caUGCU-GCGCauCaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 31751 0.7 0.777952
Target:  5'- -aGCGGCGCGUGGUcagcgugCaCCCGcGCGCGc -3'
miRNA:   3'- caUGCUGCGCAUCAa------G-GGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 31964 0.7 0.768442
Target:  5'- -cGCGGCGCGcgGGgcgggCCCCggGGCGCGa -3'
miRNA:   3'- caUGCUGCGCa-UCaa---GGGG--UCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 32340 0.7 0.749055
Target:  5'- -cGCGGCGCGgagGGggcccagCCCCcGCGCGg -3'
miRNA:   3'- caUGCUGCGCa--UCaa-----GGGGuCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 33711 0.66 0.92924
Target:  5'- -gGCGGCGCGUGG---CCgAGCugGg -3'
miRNA:   3'- caUGCUGCGCAUCaagGGgUCGugCa -5'
6411 3' -54.7 NC_001847.1 + 34253 0.67 0.879063
Target:  5'- -cGCGGCGCGaGGcgCagaCCGGCGCGc -3'
miRNA:   3'- caUGCUGCGCaUCaaGg--GGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 35447 0.69 0.805637
Target:  5'- gGUGCGGCGCGacgcggCCgCGGCGCGa -3'
miRNA:   3'- -CAUGCUGCGCaucaa-GGgGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 35913 0.7 0.768442
Target:  5'- -gACGGCGCGUGGgagCCUuuguggCGGCGCGc -3'
miRNA:   3'- caUGCUGCGCAUCaa-GGG------GUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 36665 0.68 0.87173
Target:  5'- -gGCGGCGCGUgcuGGaaCCCgAGCugGc -3'
miRNA:   3'- caUGCUGCGCA---UCaaGGGgUCGugCa -5'
6411 3' -54.7 NC_001847.1 + 38265 0.7 0.777952
Target:  5'- -cACGGCG-GUcccUCCCCAGCGCGg -3'
miRNA:   3'- caUGCUGCgCAucaAGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 38457 0.71 0.698903
Target:  5'- -gGCGACGCGUAcccgccGgcCCCCGcGCACGa -3'
miRNA:   3'- caUGCUGCGCAU------CaaGGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 38508 0.66 0.923819
Target:  5'- -gGCGGCGCGg---UCgCCGGCGCuGUg -3'
miRNA:   3'- caUGCUGCGCaucaAGgGGUCGUG-CA- -5'
6411 3' -54.7 NC_001847.1 + 38511 0.69 0.805637
Target:  5'- -cACGACGCGUAcccgccGgcCCCCGcGCACGc -3'
miRNA:   3'- caUGCUGCGCAU------CaaGGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 38757 0.69 0.787328
Target:  5'- -aGCGugGCGgcGggCCCguGCugGa -3'
miRNA:   3'- caUGCugCGCauCaaGGGguCGugCa -5'
6411 3' -54.7 NC_001847.1 + 41562 0.68 0.856404
Target:  5'- aGUGCGAgCGCGUcGUgUCCgAGCGCGc -3'
miRNA:   3'- -CAUGCU-GCGCAuCAaGGGgUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 41828 0.66 0.918152
Target:  5'- -gGCGGCGCGgg--UCCCagggcuggGGCACGUc -3'
miRNA:   3'- caUGCUGCGCaucaAGGGg-------UCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 42483 0.66 0.923819
Target:  5'- cGUACGuCGCGUuuga-CCCGGCGCu- -3'
miRNA:   3'- -CAUGCuGCGCAucaagGGGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 43582 0.68 0.840241
Target:  5'- -gGCGACGCGcg---CCCCAGCGUGg -3'
miRNA:   3'- caUGCUGCGCaucaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 45339 0.67 0.87834
Target:  5'- -cACGGCGgcugccaCGgcGUUCgCCAGCGCGa -3'
miRNA:   3'- caUGCUGC-------GCauCAAGgGGUCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.