miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6411 3' -54.7 NC_001847.1 + 1261 0.66 0.934413
Target:  5'- -aGCGGCGCGccgAGc-CCCCAGCgguugGCGg -3'
miRNA:   3'- caUGCUGCGCa--UCaaGGGGUCG-----UGCa -5'
6411 3' -54.7 NC_001847.1 + 1513 0.71 0.67837
Target:  5'- -aGCcGCGCGUAGgcggCCUCGGCGCGc -3'
miRNA:   3'- caUGcUGCGCAUCaa--GGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 2246 0.71 0.719205
Target:  5'- -cGCgGGCGUGUGGUagUCCCCgggcGGCACGc -3'
miRNA:   3'- caUG-CUGCGCAUCA--AGGGG----UCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 2294 0.67 0.891007
Target:  5'- -gGCGGCGgGgccgccgggcggcauGggCCCCAGCACGc -3'
miRNA:   3'- caUGCUGCgCau-------------CaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 3157 0.68 0.840241
Target:  5'- -gGCGGCGCGgcGggccgCCuCCAGCGCc- -3'
miRNA:   3'- caUGCUGCGCauCaa---GG-GGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 3833 0.66 0.923264
Target:  5'- -aGCGugGCGUuGUUcgcgccgCCCCAG-ACGUa -3'
miRNA:   3'- caUGCugCGCAuCAA-------GGGGUCgUGCA- -5'
6411 3' -54.7 NC_001847.1 + 10849 0.67 0.879063
Target:  5'- -gGCGGCGCGUGG--CCgaGGCGCGg -3'
miRNA:   3'- caUGCUGCGCAUCaaGGggUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 13644 0.76 0.428563
Target:  5'- -aGCGAagcuCGCGcUGGUUCUCCGGCGCGg -3'
miRNA:   3'- caUGCU----GCGC-AUCAAGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 17297 0.67 0.893044
Target:  5'- -cGCGGCGgGUAGUaCUCggCGGCGCGg -3'
miRNA:   3'- caUGCUGCgCAUCAaGGG--GUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 20071 0.71 0.719205
Target:  5'- -aGCGGCGUGgcGgcUCCCgCGGCGCGg -3'
miRNA:   3'- caUGCUGCGCauCa-AGGG-GUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 23788 0.68 0.831863
Target:  5'- ---gGGCGCG-AGgUCgCCCAGCGCGg -3'
miRNA:   3'- caugCUGCGCaUCaAG-GGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 26308 0.68 0.848424
Target:  5'- -cGCGGCGaguCGUGGggcagcgUCCCCAGgCGCGc -3'
miRNA:   3'- caUGCUGC---GCAUCa------AGGGGUC-GUGCa -5'
6411 3' -54.7 NC_001847.1 + 26457 0.7 0.729245
Target:  5'- -gGCcGCGCGgcuGUUCgCCAGCGCGg -3'
miRNA:   3'- caUGcUGCGCau-CAAGgGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 28506 0.66 0.92924
Target:  5'- -gGCGAgGCGUGG--CCCggCAGCGCGc -3'
miRNA:   3'- caUGCUgCGCAUCaaGGG--GUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 29327 0.68 0.831863
Target:  5'- -cGCGACGCGguggAGcgcgcgcggCUCCAGCGCGc -3'
miRNA:   3'- caUGCUGCGCa---UCaa-------GGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 29416 0.68 0.864175
Target:  5'- -gGCGGCGCGgaccGUggCCCCGcucGCGCGg -3'
miRNA:   3'- caUGCUGCGCau--CAa-GGGGU---CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 29539 0.8 0.259546
Target:  5'- -cGCGGCGCGggcgcucgAGUUCCCCcGCACGg -3'
miRNA:   3'- caUGCUGCGCa-------UCAAGGGGuCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 29803 0.68 0.831863
Target:  5'- ---gGACGCG-AGcgCCCCGGCGCc- -3'
miRNA:   3'- caugCUGCGCaUCaaGGGGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 30580 0.69 0.814553
Target:  5'- -cGCGGCGCGguggAGUaCCUCuGCGCGc -3'
miRNA:   3'- caUGCUGCGCa---UCAaGGGGuCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 31085 0.71 0.719205
Target:  5'- aGUACGACGCGgcgcUGGggCCgggCAGCGCGg -3'
miRNA:   3'- -CAUGCUGCGC----AUCaaGGg--GUCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.