miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6411 3' -54.7 NC_001847.1 + 29539 0.8 0.259546
Target:  5'- -cGCGGCGCGggcgcucgAGUUCCCCcGCACGg -3'
miRNA:   3'- caUGCUGCGCa-------UCAAGGGGuCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 64197 0.69 0.796559
Target:  5'- -cGCGACGC-UGGcgaCCCUGGCGCGUc -3'
miRNA:   3'- caUGCUGCGcAUCaa-GGGGUCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 38511 0.69 0.805637
Target:  5'- -cACGACGCGUAcccgccGgcCCCCGcGCACGc -3'
miRNA:   3'- caUGCUGCGCAU------CaaGGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 67718 0.65 0.937399
Target:  5'- -aGCG-CGcCGUAGcagcuggccaugCCCCAGCGCGa -3'
miRNA:   3'- caUGCuGC-GCAUCaa----------GGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 77775 0.71 0.67837
Target:  5'- cUACGACGUGcGGgaggCCCAGCGCGg -3'
miRNA:   3'- cAUGCUGCGCaUCaag-GGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 104326 0.71 0.67837
Target:  5'- -aGCcGCGCGUAGgcggCCUCGGCGCGc -3'
miRNA:   3'- caUGcUGCGCAUCaa--GGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 38457 0.71 0.698903
Target:  5'- -gGCGACGCGUAcccgccGgcCCCCGcGCACGa -3'
miRNA:   3'- caUGCUGCGCAU------CaaGGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 31085 0.71 0.719205
Target:  5'- aGUACGACGCGgcgcUGGggCCgggCAGCGCGg -3'
miRNA:   3'- -CAUGCUGCGC----AUCaaGGg--GUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 67266 0.7 0.749055
Target:  5'- uUACGugGgGUGccgccgUUCCCAGCGCGUc -3'
miRNA:   3'- cAUGCugCgCAUca----AGGGGUCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 31751 0.7 0.777952
Target:  5'- -aGCGGCGCGUGGUcagcgugCaCCCGcGCGCGc -3'
miRNA:   3'- caUGCUGCGCAUCAa------G-GGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 62091 0.7 0.749055
Target:  5'- -cGCGGCGCGUuGcUUCgCCAGCAgGUu -3'
miRNA:   3'- caUGCUGCGCAuC-AAGgGGUCGUgCA- -5'
6411 3' -54.7 NC_001847.1 + 26457 0.7 0.729245
Target:  5'- -gGCcGCGCGgcuGUUCgCCAGCGCGg -3'
miRNA:   3'- caUGcUGCGCau-CAAGgGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 73867 0.74 0.554285
Target:  5'- gGUGCGcgggGCGCGUcAGUUCCgCCGGCGCc- -3'
miRNA:   3'- -CAUGC----UGCGCA-UCAAGG-GGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 134777 0.7 0.768442
Target:  5'- -cGCGGCGCGcgGGgcgggCCCCggGGCGCGa -3'
miRNA:   3'- caUGCUGCGCa-UCaa---GGGG--UCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 77366 0.73 0.574746
Target:  5'- cGUGCGACGCGUGG--CgCCGGCGCc- -3'
miRNA:   3'- -CAUGCUGCGCAUCaaGgGGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 105059 0.71 0.719205
Target:  5'- -cGCgGGCGUGUGGUagUCCCCgggcGGCACGc -3'
miRNA:   3'- caUG-CUGCGCAUCA--AGGGG----UCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 35913 0.7 0.768442
Target:  5'- -gACGGCGCGUGGgagCCUuuguggCGGCGCGc -3'
miRNA:   3'- caUGCUGCGCAUCaa-GGG------GUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 35447 0.69 0.805637
Target:  5'- gGUGCGGCGCGacgcggCCgCGGCGCGa -3'
miRNA:   3'- -CAUGCUGCGCaucaa-GGgGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 96354 0.72 0.672176
Target:  5'- cGUGCGACGCGcUGccggcagggacgcucGUgCUCCAGCACGg -3'
miRNA:   3'- -CAUGCUGCGC-AU---------------CAaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 134254 0.71 0.688661
Target:  5'- -gGCGGcCGCGgcGg-CCCCGGCGCGg -3'
miRNA:   3'- caUGCU-GCGCauCaaGGGGUCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.