miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6411 3' -54.7 NC_001847.1 + 84311 1.06 0.004976
Target:  5'- uGUACGACGCGUAGUUCCCCAGCACGUc -3'
miRNA:   3'- -CAUGCUGCGCAUCAAGGGGUCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 93074 0.8 0.25332
Target:  5'- -cACGACGCGUAGgcCCCCGcGCGCGc -3'
miRNA:   3'- caUGCUGCGCAUCaaGGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 29539 0.8 0.259546
Target:  5'- -cGCGGCGCGggcgcucgAGUUCCCCcGCACGg -3'
miRNA:   3'- caUGCUGCGCa-------UCAAGGGGuCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 13644 0.76 0.428563
Target:  5'- -aGCGAagcuCGCGcUGGUUCUCCGGCGCGg -3'
miRNA:   3'- caUGCU----GCGC-AUCAAGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 73867 0.74 0.554285
Target:  5'- gGUGCGcgggGCGCGUcAGUUCCgCCGGCGCc- -3'
miRNA:   3'- -CAUGC----UGCGCA-UCAAGG-GGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 47947 0.73 0.564491
Target:  5'- --cCGACGCGguuGUUCUCCAGCagcGCGUg -3'
miRNA:   3'- cauGCUGCGCau-CAAGGGGUCG---UGCA- -5'
6411 3' -54.7 NC_001847.1 + 77366 0.73 0.574746
Target:  5'- cGUGCGACGCGUGG--CgCCGGCGCc- -3'
miRNA:   3'- -CAUGCUGCGCAUCaaGgGGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 90743 0.72 0.616116
Target:  5'- -cGCGGCGCGUGGccgggCCCCGGgaGCGg -3'
miRNA:   3'- caUGCUGCGCAUCaa---GGGGUCg-UGCa -5'
6411 3' -54.7 NC_001847.1 + 96354 0.72 0.672176
Target:  5'- cGUGCGACGCGcUGccggcagggacgcucGUgCUCCAGCACGg -3'
miRNA:   3'- -CAUGCUGCGC-AU---------------CAaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 77775 0.71 0.67837
Target:  5'- cUACGACGUGcGGgaggCCCAGCGCGg -3'
miRNA:   3'- cAUGCUGCGCaUCaag-GGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 1513 0.71 0.67837
Target:  5'- -aGCcGCGCGUAGgcggCCUCGGCGCGc -3'
miRNA:   3'- caUGcUGCGCAUCaa--GGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 104326 0.71 0.67837
Target:  5'- -aGCcGCGCGUAGgcggCCUCGGCGCGc -3'
miRNA:   3'- caUGcUGCGCAUCaa--GGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 31441 0.71 0.688661
Target:  5'- -gGCGGcCGCGgcGg-CCCCGGCGCGg -3'
miRNA:   3'- caUGCU-GCGCauCaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 134254 0.71 0.688661
Target:  5'- -gGCGGcCGCGgcGg-CCCCGGCGCGg -3'
miRNA:   3'- caUGCU-GCGCauCaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 38457 0.71 0.698903
Target:  5'- -gGCGACGCGUAcccgccGgcCCCCGcGCACGa -3'
miRNA:   3'- caUGCUGCGCAU------CaaGGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 50974 0.71 0.709087
Target:  5'- -gGCGGcCGCGUcuagggcuacgAGgUCCCCGGCGCGc -3'
miRNA:   3'- caUGCU-GCGCA-----------UCaAGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 60756 0.71 0.709087
Target:  5'- -gGCGGcCGCGcGGUcCCCCAGCGCc- -3'
miRNA:   3'- caUGCU-GCGCaUCAaGGGGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 20071 0.71 0.719205
Target:  5'- -aGCGGCGUGgcGgcUCCCgCGGCGCGg -3'
miRNA:   3'- caUGCUGCGCauCa-AGGG-GUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 2246 0.71 0.719205
Target:  5'- -cGCgGGCGUGUGGUagUCCCCgggcGGCACGc -3'
miRNA:   3'- caUG-CUGCGCAUCA--AGGGG----UCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 31085 0.71 0.719205
Target:  5'- aGUACGACGCGgcgcUGGggCCgggCAGCGCGg -3'
miRNA:   3'- -CAUGCUGCGC----AUCaaGGg--GUCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.