miRNA display CGI


Results 1 - 20 of 1026 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6420 3' -59.1 NC_001847.1 + 113324 0.65 0.78704
Target:  5'- uGGCGGcUGGUgcaagucggUGUGGCAgcgcacgAACGUCGCg -3'
miRNA:   3'- -CCGCCcGCCG---------ACAUCGU-------UUGCGGCGg -5'
6420 3' -59.1 NC_001847.1 + 100965 0.65 0.78704
Target:  5'- aGCGGGgcuCGGCgccgAGCuccgagcgacggaAggUGCCGCCg -3'
miRNA:   3'- cCGCCC---GCCGaca-UCG-------------UuuGCGGCGG- -5'
6420 3' -59.1 NC_001847.1 + 61617 0.65 0.785235
Target:  5'- cGCGGuugcccacguacauGCGcccGCUGgacuGC-AGCGCCGCCa -3'
miRNA:   3'- cCGCC--------------CGC---CGACau--CGuUUGCGGCGG- -5'
6420 3' -59.1 NC_001847.1 + 72590 0.65 0.785235
Target:  5'- cGCGGGCuGggccaaaacgcgcuGCUGgccgcacGGCAcgUGCCGCCc -3'
miRNA:   3'- cCGCCCG-C--------------CGACa------UCGUuuGCGGCGG- -5'
6420 3' -59.1 NC_001847.1 + 97843 0.66 0.782517
Target:  5'- cGCGGGCuGCgcgcgccuuauacaaUGcuccAGUcGACGCCGCCc -3'
miRNA:   3'- cCGCCCGcCG---------------ACa---UCGuUUGCGGCGG- -5'
6420 3' -59.1 NC_001847.1 + 119999 0.66 0.778875
Target:  5'- aGCGGccccgaCGcGCaGUAGCAAGgccagcacCGCCGCCg -3'
miRNA:   3'- cCGCCc-----GC-CGaCAUCGUUU--------GCGGCGG- -5'
6420 3' -59.1 NC_001847.1 + 23384 0.66 0.778875
Target:  5'- gGGUGGG-GGCUG-GGUggGCGgaGCUc -3'
miRNA:   3'- -CCGCCCgCCGACaUCGuuUGCggCGG- -5'
6420 3' -59.1 NC_001847.1 + 100873 0.66 0.778875
Target:  5'- cGgGGGuCGGC---GGCAGggGCGCgGCCg -3'
miRNA:   3'- cCgCCC-GCCGacaUCGUU--UGCGgCGG- -5'
6420 3' -59.1 NC_001847.1 + 59175 0.66 0.778875
Target:  5'- aGgGGGCGGCgGUcGaGGGgGCCGUCg -3'
miRNA:   3'- cCgCCCGCCGaCAuCgUUUgCGGCGG- -5'
6420 3' -59.1 NC_001847.1 + 126197 0.66 0.778875
Target:  5'- gGGUGGG-GGCUG-GGUggGCGgaGCUc -3'
miRNA:   3'- -CCGCCCgCCGACaUCGuuUGCggCGG- -5'
6420 3' -59.1 NC_001847.1 + 20956 0.66 0.778875
Target:  5'- -aCGGGauGCUGcguuuggAGCGAGCGCCcagugagcgcgcGCCg -3'
miRNA:   3'- ccGCCCgcCGACa------UCGUUUGCGG------------CGG- -5'
6420 3' -59.1 NC_001847.1 + 21618 0.66 0.778875
Target:  5'- cGCuGGCGGCgcuUGGCcGGCGCgGgCCg -3'
miRNA:   3'- cCGcCCGCCGac-AUCGuUUGCGgC-GG- -5'
6420 3' -59.1 NC_001847.1 + 30150 0.66 0.778875
Target:  5'- cGCGGcGCGGCUc--GCGGACcacCCGCUc -3'
miRNA:   3'- cCGCC-CGCCGAcauCGUUUGc--GGCGG- -5'
6420 3' -59.1 NC_001847.1 + 58511 0.66 0.778875
Target:  5'- gGGCaGGGCGaCg--GGCAgggacacgaaGAgGCCGCCg -3'
miRNA:   3'- -CCG-CCCGCcGacaUCGU----------UUgCGGCGG- -5'
6420 3' -59.1 NC_001847.1 + 88605 0.66 0.778875
Target:  5'- gGGCGGGCGcGCgcuccacuuUGU-GCGcGCGCaCGUg -3'
miRNA:   3'- -CCGCCCGC-CG---------ACAuCGUuUGCG-GCGg -5'
6420 3' -59.1 NC_001847.1 + 120057 0.66 0.778875
Target:  5'- aGCGcGGCcccGCUGccGCAGGCgauccccggGCCGCCg -3'
miRNA:   3'- cCGC-CCGc--CGACauCGUUUG---------CGGCGG- -5'
6420 3' -59.1 NC_001847.1 + 11663 0.66 0.778875
Target:  5'- cGGC-GGCGGUga-AGgGGGCGCUGCa -3'
miRNA:   3'- -CCGcCCGCCGacaUCgUUUGCGGCGg -5'
6420 3' -59.1 NC_001847.1 + 32423 0.66 0.778875
Target:  5'- gGGCagccGGGgGGUgcgGGCcuuuCGCCGCCc -3'
miRNA:   3'- -CCG----CCCgCCGacaUCGuuu-GCGGCGG- -5'
6420 3' -59.1 NC_001847.1 + 116366 0.66 0.778875
Target:  5'- cGCGGaGCucgcGCUGUcGGC---CGCCGCCu -3'
miRNA:   3'- cCGCC-CGc---CGACA-UCGuuuGCGGCGG- -5'
6420 3' -59.1 NC_001847.1 + 129051 0.66 0.778875
Target:  5'- cGCGGGCGucucGCgccuccGCGAGCG-CGCCg -3'
miRNA:   3'- cCGCCCGC----CGacau--CGUUUGCgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.