miRNA display CGI

Results 21 - 40 of 1026 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6420	3'	-59.1	NC_001847.1	+	53177	0.79	0.151658
	Target:  5'- -uCGGGCgcugcgacccGGCUGUGGC--GCGCCGCCa -3' miRNA:   3'- ccGCCCG----------CCGACAUCGuuUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	132379	0.8	0.130267
	Target:  5'- cGGCGGG-GGCgccGgcGCcGGCGCCGCCg -3' miRNA:   3'- -CCGCCCgCCGa--CauCGuUUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	91050	0.82	0.10607
	Target:  5'- cGCaGGCGGCgGgcGCAGACGCCGCa -3' miRNA:   3'- cCGcCCGCCGaCauCGUUUGCGGCGg -5'
6420	3'	-59.1	NC_001847.1	+	11328	0.85	0.059566
	Target:  5'- cGGCGGGCGGCUGgcgccggAGCGGgagcacucguacGCGCgGCCg -3' miRNA:   3'- -CCGCCCGCCGACa------UCGUU------------UGCGgCGG- -5'
6420	3'	-59.1	NC_001847.1	+	45709	0.78	0.189741
	Target:  5'- cGGUGGGCGGCUc-AGCuc-CGCCGUCa -3' miRNA:   3'- -CCGCCCGCCGAcaUCGuuuGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	120788	0.79	0.163512
	Target:  5'- cGCuGGCGGCguuccccGCAGGCGCCGCCa -3' miRNA:   3'- cCGcCCGCCGacau---CGUUUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	19320	0.8	0.130267
	Target:  5'- cGCGGccGUGGCUGUuaacGCAAGCGCCGCg -3' miRNA:   3'- cCGCC--CGCCGACAu---CGUUUGCGGCGg -5'
6420	3'	-59.1	NC_001847.1	+	62491	0.86	0.055003
	Target:  5'- cGGCGGGCGGCcgcgggGUGGCGGccACaGCCGCCc -3' miRNA:   3'- -CCGCCCGCCGa-----CAUCGUU--UG-CGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	35908	0.79	0.163104
	Target:  5'- cGUGGGaCGGCgcgugggagccuuUGUGGCGGcGCGCCGCCg -3' miRNA:   3'- cCGCCC-GCCG-------------ACAUCGUU-UGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	33507	0.89	0.032199
	Target:  5'- cGCGGGCGGC---GGCGGGCGCCGCCg -3' miRNA:   3'- cCGCCCGCCGacaUCGUUUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	75344	0.8	0.130267
	Target:  5'- gGGCGGGCGGCaGUGGUAAAaGCgCGUCu -3' miRNA:   3'- -CCGCCCGCCGaCAUCGUUUgCG-GCGG- -5'
6420	3'	-59.1	NC_001847.1	+	68057	0.79	0.153192
	Target:  5'- cGGCGGccucgcggcgcgccuGCGGCgg-GGCGAACGCCGCg -3' miRNA:   3'- -CCGCC---------------CGCCGacaUCGUUUGCGGCGg -5'
6420	3'	-59.1	NC_001847.1	+	38023	0.81	0.11759
	Target:  5'- cGCGGGU-GCUGUgGGCGcGCGCCGCCg -3' miRNA:   3'- cCGCCCGcCGACA-UCGUuUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	53615	0.82	0.108847
	Target:  5'- uGGCGGGCGGCgggGUGGCA----CCGCCc -3' miRNA:   3'- -CCGCCCGCCGa--CAUCGUuugcGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	21187	0.84	0.079633
	Target:  5'- cGGCGacgcgcccGGCGGC-GUAGgAGACGCCGCCg -3' miRNA:   3'- -CCGC--------CCGCCGaCAUCgUUUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	29939	0.85	0.062809
	Target:  5'- cGGUGGGCGGUUGUgucuucuuAGCGAgcauguaccugcACGCCGCCu -3' miRNA:   3'- -CCGCCCGCCGACA--------UCGUU------------UGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	128286	0.77	0.209222
	Target:  5'- aGGCGGGCcaa---AGCAAGCGCCGCCc -3' miRNA:   3'- -CCGCCCGccgacaUCGUUUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	120601	0.78	0.194456
	Target:  5'- cGGCaucuacGGCGGCaccgcggGcAGCGAGCGCCGCCg -3' miRNA:   3'- -CCGc-----CCGCCGa------CaUCGUUUGCGGCGG- -5'
6420	3'	-59.1	NC_001847.1	+	82504	0.78	0.18061
	Target:  5'- uGCGGGCGGCcaucggcaacGUGGCGAuccGCGCgGCCu -3' miRNA:   3'- cCGCCCGCCGa---------CAUCGUU---UGCGgCGG- -5'
6420	3'	-59.1	NC_001847.1	+	11965	0.79	0.167645
	Target:  5'- gGGaUGGGCGGCUG-AGCGccgccGCGCCGUCu -3' miRNA:   3'- -CC-GCCCGCCGACaUCGUu----UGCGGCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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