miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6422 3' -58.2 NC_001847.1 + 55502 0.66 0.817051
Target:  5'- cGACGugggcccugcugcuGGCGgcGCCCGcCGCGGggCGAc -3'
miRNA:   3'- -UUGCu-------------CCGCuaCGGGCuGUGCCa-GCU- -5'
6422 3' -58.2 NC_001847.1 + 88273 0.66 0.814471
Target:  5'- gGACGGGGgGAgcgcuucgccugcugGgCCGACGCGGcUCGc -3'
miRNA:   3'- -UUGCUCCgCUa--------------CgGGCUGUGCC-AGCu -5'
6422 3' -58.2 NC_001847.1 + 17919 0.66 0.813607
Target:  5'- uAACG-GGCGGgucgUGCUCgGACACGGaCGGc -3'
miRNA:   3'- -UUGCuCCGCU----ACGGG-CUGUGCCaGCU- -5'
6422 3' -58.2 NC_001847.1 + 124933 0.66 0.813607
Target:  5'- cAGCGGGcGCGcccuggGCCCGGCGgCGG-CGGc -3'
miRNA:   3'- -UUGCUC-CGCua----CGGGCUGU-GCCaGCU- -5'
6422 3' -58.2 NC_001847.1 + 102686 0.66 0.813607
Target:  5'- gGGCGGGGCGGgggcagggcGCCgGGCggGCGG-CGAa -3'
miRNA:   3'- -UUGCUCCGCUa--------CGGgCUG--UGCCaGCU- -5'
6422 3' -58.2 NC_001847.1 + 75492 0.66 0.813607
Target:  5'- -uCGAGGCGgcGCCgGuGCACGGcCa- -3'
miRNA:   3'- uuGCUCCGCuaCGGgC-UGUGCCaGcu -5'
6422 3' -58.2 NC_001847.1 + 95327 0.66 0.813607
Target:  5'- aAGCGcucGGGCcc-GCCgcggaCGACGCGGUCGAc -3'
miRNA:   3'- -UUGC---UCCGcuaCGG-----GCUGUGCCAGCU- -5'
6422 3' -58.2 NC_001847.1 + 65107 0.66 0.813607
Target:  5'- gAGCGAGcCGcgGCUCGGCugGCGGUgGGg -3'
miRNA:   3'- -UUGCUCcGCuaCGGGCUG--UGCCAgCU- -5'
6422 3' -58.2 NC_001847.1 + 95093 0.66 0.813607
Target:  5'- uGGCGuGGCGGgggGCgCGAUugGGggcgCGGa -3'
miRNA:   3'- -UUGCuCCGCUa--CGgGCUGugCCa---GCU- -5'
6422 3' -58.2 NC_001847.1 + 22120 0.66 0.813607
Target:  5'- cAGCGGGcGCGcccuggGCCCGGCGgCGG-CGGc -3'
miRNA:   3'- -UUGCUC-CGCua----CGGGCUGU-GCCaGCU- -5'
6422 3' -58.2 NC_001847.1 + 90831 0.66 0.808395
Target:  5'- aGGCGGGGCGAgaucagcgagcggcGCCCcggggccggGGCugGuGUCGAg -3'
miRNA:   3'- -UUGCUCCGCUa-------------CGGG---------CUGugC-CAGCU- -5'
6422 3' -58.2 NC_001847.1 + 58161 0.66 0.804888
Target:  5'- -uCGAGGCGGgcgaCCgCGGCGgGGUCGu -3'
miRNA:   3'- uuGCUCCGCUac--GG-GCUGUgCCAGCu -5'
6422 3' -58.2 NC_001847.1 + 111418 0.66 0.804888
Target:  5'- --aGGGGCGgcGCUCGGC-CGGgggCGGg -3'
miRNA:   3'- uugCUCCGCuaCGGGCUGuGCCa--GCU- -5'
6422 3' -58.2 NC_001847.1 + 32657 0.66 0.804888
Target:  5'- gGGCGAGGUGGacggcGCCggCGGCGCGGgcccgcUCGAg -3'
miRNA:   3'- -UUGCUCCGCUa----CGG--GCUGUGCC------AGCU- -5'
6422 3' -58.2 NC_001847.1 + 37321 0.66 0.804888
Target:  5'- -gUGuGGCGGcacgcGCCCGACGCGGcCa- -3'
miRNA:   3'- uuGCuCCGCUa----CGGGCUGUGCCaGcu -5'
6422 3' -58.2 NC_001847.1 + 74739 0.66 0.804888
Target:  5'- uAGCucGGCGAcccgGCUgggaGACGCGGUCGGc -3'
miRNA:   3'- -UUGcuCCGCUa---CGGg---CUGUGCCAGCU- -5'
6422 3' -58.2 NC_001847.1 + 41878 0.66 0.804888
Target:  5'- cGCGGcGCGAUacgGCCCG-CGCGG-CGAg -3'
miRNA:   3'- uUGCUcCGCUA---CGGGCuGUGCCaGCU- -5'
6422 3' -58.2 NC_001847.1 + 60523 0.66 0.804888
Target:  5'- cGCGAGGCGcUGCCCagcuGCACGauggcGUUGGc -3'
miRNA:   3'- uUGCUCCGCuACGGGc---UGUGC-----CAGCU- -5'
6422 3' -58.2 NC_001847.1 + 8605 0.66 0.804888
Target:  5'- --aGGGGCGgcGCUCGGC-CGGgggCGGg -3'
miRNA:   3'- uugCUCCGCuaCGGGCUGuGCCa--GCU- -5'
6422 3' -58.2 NC_001847.1 + 71544 0.66 0.796014
Target:  5'- uAGCaGAGGCacGcgGCCacgggGugGCGGUCGAa -3'
miRNA:   3'- -UUG-CUCCG--CuaCGGg----CugUGCCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.