miRNA display CGI


Results 1 - 20 of 1127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6422 5' -64.1 NC_001847.1 + 123194 0.65 0.542652
Target:  5'- cGCCCaucccuaGCGGCGUCCauggcgucuaagGGCGCCuagaaaGCCGcggGCg -3'
miRNA:   3'- -UGGG-------CGCCGCGGG------------UCGUGG------UGGCa--CG- -5'
6422 5' -64.1 NC_001847.1 + 98951 0.65 0.542652
Target:  5'- aGCCCcucguacGCGGCcucGCCgC-GCACCGCCGcaaGCg -3'
miRNA:   3'- -UGGG-------CGCCG---CGG-GuCGUGGUGGCa--CG- -5'
6422 5' -64.1 NC_001847.1 + 26496 0.66 0.537902
Target:  5'- gUCCGCGGC-CCCGGCcacuucugcagcgucGCCcGCCGUc- -3'
miRNA:   3'- uGGGCGCCGcGGGUCG---------------UGG-UGGCAcg -5'
6422 5' -64.1 NC_001847.1 + 57204 0.66 0.534112
Target:  5'- cGCCCgGCGGCGUuugcuaCAGCcgcCCGCCG-GUc -3'
miRNA:   3'- -UGGG-CGCCGCGg-----GUCGu--GGUGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 28335 0.66 0.534112
Target:  5'- cGCUCGcCGGCGggCAGCGCgGCCGUc- -3'
miRNA:   3'- -UGGGC-GCCGCggGUCGUGgUGGCAcg -5'
6422 5' -64.1 NC_001847.1 + 63987 0.66 0.534112
Target:  5'- gUUCGCGGCGCUCaAGUGCCGcgagcucuacCCGgGCg -3'
miRNA:   3'- uGGGCGCCGCGGG-UCGUGGU----------GGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 16133 0.66 0.534112
Target:  5'- cACCUGCGGgucugcgaucaGCgCCAGCaugucgcacGCCGCCGcGCu -3'
miRNA:   3'- -UGGGCGCCg----------CG-GGUCG---------UGGUGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 21976 0.66 0.534112
Target:  5'- uUCgGCGGCgGCCCccuCGCCGCCGUu- -3'
miRNA:   3'- uGGgCGCCG-CGGGuc-GUGGUGGCAcg -5'
6422 5' -64.1 NC_001847.1 + 84917 0.66 0.534112
Target:  5'- gUCUGCcGCGCCCuGCAgCAUCG-GCc -3'
miRNA:   3'- uGGGCGcCGCGGGuCGUgGUGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 7937 0.66 0.534112
Target:  5'- uCCCGCGcGCGCC--GCGCCggaguucgcGCCaUGCg -3'
miRNA:   3'- uGGGCGC-CGCGGguCGUGG---------UGGcACG- -5'
6422 5' -64.1 NC_001847.1 + 9686 0.66 0.534112
Target:  5'- cGCCCGgGGCaaGCCCGcccuccccggacGCGCC-CUGcGCg -3'
miRNA:   3'- -UGGGCgCCG--CGGGU------------CGUGGuGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 34175 0.66 0.534112
Target:  5'- cGCUCGgagcuCGGCGCCgAGCcCCGCUGUu- -3'
miRNA:   3'- -UGGGC-----GCCGCGGgUCGuGGUGGCAcg -5'
6422 5' -64.1 NC_001847.1 + 127099 0.66 0.534112
Target:  5'- gGCCgCGCGGC-UuuGGguCCACCGgGCu -3'
miRNA:   3'- -UGG-GCGCCGcGggUCguGGUGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 113945 0.66 0.534112
Target:  5'- -gCgGCGGCGUCUccuaCGCCGCCGgGCg -3'
miRNA:   3'- ugGgCGCCGCGGGuc--GUGGUGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 100771 0.66 0.534112
Target:  5'- -gCCGCcguuguuucGGcCGCaUCAGCGCCGCCGUcaugGCg -3'
miRNA:   3'- ugGGCG---------CC-GCG-GGUCGUGGUGGCA----CG- -5'
6422 5' -64.1 NC_001847.1 + 93712 0.66 0.534112
Target:  5'- gGCCC-CGGCGaCUCGcaucGCACCgGCCG-GCu -3'
miRNA:   3'- -UGGGcGCCGC-GGGU----CGUGG-UGGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 90882 0.66 0.534112
Target:  5'- -gCCGgGGCcguuGCCCAGuCGCCGgCGcGCu -3'
miRNA:   3'- ugGGCgCCG----CGGGUC-GUGGUgGCaCG- -5'
6422 5' -64.1 NC_001847.1 + 73240 0.66 0.534112
Target:  5'- -gCgGCGGCGCgggcGCGCUcgagGCCGUGCg -3'
miRNA:   3'- ugGgCGCCGCGggu-CGUGG----UGGCACG- -5'
6422 5' -64.1 NC_001847.1 + 68849 0.66 0.534112
Target:  5'- aGCUCG-GGCGCgaGGCGgCGgCGUGCg -3'
miRNA:   3'- -UGGGCgCCGCGggUCGUgGUgGCACG- -5'
6422 5' -64.1 NC_001847.1 + 124789 0.66 0.534112
Target:  5'- uUCgGCGGCgGCCCccuCGCCGCCGUu- -3'
miRNA:   3'- uGGgCGCCG-CGGGuc-GUGGUGGCAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.