Results 61 - 80 of 611 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 64715 | 0.66 | 0.8718 |
Target: 5'- gCGGcaccGCCACCGaCGCGgCCGuGCAg-- -3' miRNA: 3'- gGCCu---CGGUGGC-GCGC-GGUuUGUauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 41854 | 0.66 | 0.8718 |
Target: 5'- gCGcGGCCugCGCGCcGCC-GACAUc- -3' miRNA: 3'- gGCcUCGGugGCGCG-CGGuUUGUAuu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 91158 | 0.66 | 0.86428 |
Target: 5'- cUCGcuGGCCA-CGCGCGCCuuAUAUAGa -3' miRNA: 3'- -GGCc-UCGGUgGCGCGCGGuuUGUAUU- -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 51909 | 0.66 | 0.86428 |
Target: 5'- gCCGccGCCccgGCCGCgGCGUCAAACAc-- -3' miRNA: 3'- -GGCcuCGG---UGGCG-CGCGGUUUGUauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 48630 | 0.66 | 0.86428 |
Target: 5'- gCGGgcgcccAGCCGCCGCGCGaCgGuGCAg-- -3' miRNA: 3'- gGCC------UCGGUGGCGCGC-GgUuUGUauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 12389 | 0.66 | 0.86428 |
Target: 5'- cUCGGGGCgCguguggucggugACCGCGCGCacCAAACGg-- -3' miRNA: 3'- -GGCCUCG-G------------UGGCGCGCG--GUUUGUauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 1672 | 0.66 | 0.86428 |
Target: 5'- gCCGG-GCCGUCGCGCgGCCAGu----- -3' miRNA: 3'- -GGCCuCGGUGGCGCG-CGGUUuguauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 10185 | 0.66 | 0.86275 |
Target: 5'- gCCGGcuuuugcgcgccGCCGCCGC-CGCCGGGCc--- -3' miRNA: 3'- -GGCCu-----------CGGUGGCGcGCGGUUUGuauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 60050 | 0.66 | 0.859664 |
Target: 5'- gCCGGGgcGCCGCCGacgaucuaauggugGCGCUAGugAUGg -3' miRNA: 3'- -GGCCU--CGGUGGCg-------------CGCGGUUugUAUu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 86093 | 0.66 | 0.856545 |
Target: 5'- cCCGcGGCCgugaGCUGCGCGCCAccACGg-- -3' miRNA: 3'- -GGCcUCGG----UGGCGCGCGGUu-UGUauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 107140 | 0.66 | 0.86428 |
Target: 5'- gCGcGGCaCGCCGCGCGCU--GCAg-- -3' miRNA: 3'- gGCcUCG-GUGGCGCGCGGuuUGUauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 14949 | 0.66 | 0.86428 |
Target: 5'- gCGGGcGCCGCuCGCGCgGCCAcACc--- -3' miRNA: 3'- gGCCU-CGGUG-GCGCG-CGGUuUGuauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 38052 | 0.66 | 0.8718 |
Target: 5'- aCCGc-GCCGCCGCG-GCUAAGCu--- -3' miRNA: 3'- -GGCcuCGGUGGCGCgCGGUUUGuauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 27999 | 0.66 | 0.8718 |
Target: 5'- gCGGAgGCgGCCGCG-GCCgAAGCGg-- -3' miRNA: 3'- gGCCU-CGgUGGCGCgCGG-UUUGUauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 13248 | 0.66 | 0.8718 |
Target: 5'- gCGGGGCCACgCGgGCGguucgCAGGCAg-- -3' miRNA: 3'- gGCCUCGGUG-GCgCGCg----GUUUGUauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 1018 | 0.66 | 0.8718 |
Target: 5'- aCCaGGccGCCGCCcgcgGCGCGCCGcAGCAg-- -3' miRNA: 3'- -GG-CCu-CGGUGG----CGCGCGGU-UUGUauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 65924 | 0.66 | 0.871058 |
Target: 5'- gCGGcGCCGgcgacggcaaacgUCGCGuCGCCAAACGUc- -3' miRNA: 3'- gGCCuCGGU-------------GGCGC-GCGGUUUGUAuu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 31768 | 0.66 | 0.867314 |
Target: 5'- gCCGGAGacgcggcgcuggcguCCGCCGCcacguuccccGCGUCGGGCAc-- -3' miRNA: 3'- -GGCCUC---------------GGUGGCG----------CGCGGUUUGUauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 75272 | 0.66 | 0.86428 |
Target: 5'- gCGGAgGCCGCgCGCGCgGCCcucGGCGa-- -3' miRNA: 3'- gGCCU-CGGUG-GCGCG-CGGu--UUGUauu -5' |
|||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 28518 | 0.66 | 0.86428 |
Target: 5'- cCCGGcAGCgCGCCGC-CGCCGcccggccGCGUGc -3' miRNA: 3'- -GGCC-UCG-GUGGCGcGCGGUu------UGUAUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home