Results 41 - 60 of 611 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 54458 | 0.66 | 0.879101 |
Target: 5'- gCCGcAGCCGCCGCcgGCGCgCAGcCGUu- -3' miRNA: 3'- -GGCcUCGGUGGCG--CGCG-GUUuGUAuu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 109904 | 0.66 | 0.879101 |
Target: 5'- aCCGGcAGCUcguuguccCCGCGaCGCCGAuCAUGc -3' miRNA: 3'- -GGCC-UCGGu-------GGCGC-GCGGUUuGUAUu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 112401 | 0.66 | 0.879101 |
Target: 5'- uUGGuuGCgCGCCGCGCGgCAGuCAUAu -3' miRNA: 3'- gGCCu-CG-GUGGCGCGCgGUUuGUAUu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 38944 | 0.66 | 0.879101 |
Target: 5'- cCCGG-GCCcggggGCCGCgaGCGCCAuGGCGg-- -3' miRNA: 3'- -GGCCuCGG-----UGGCG--CGCGGU-UUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 56811 | 0.66 | 0.879101 |
Target: 5'- aCGGGGCCG--GCGCGCCugggGGCGc-- -3' miRNA: 3'- gGCCUCGGUggCGCGCGGu---UUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 38667 | 0.66 | 0.8718 |
Target: 5'- aCGGAGCCcUCGCGCaaGCUcAGCGa-- -3' miRNA: 3'- gGCCUCGGuGGCGCG--CGGuUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 132144 | 0.66 | 0.8718 |
Target: 5'- gCGGcgcuGCUGCCGCGCagggugggGCCGgcgAACAUAAa -3' miRNA: 3'- gGCCu---CGGUGGCGCG--------CGGU---UUGUAUU- -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 28518 | 0.66 | 0.86428 |
Target: 5'- cCCGGcAGCgCGCCGC-CGCCGcccggccGCGUGc -3' miRNA: 3'- -GGCC-UCG-GUGGCGcGCGGUu------UGUAUu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 75272 | 0.66 | 0.86428 |
Target: 5'- gCGGAgGCCGCgCGCGCgGCCcucGGCGa-- -3' miRNA: 3'- gGCCU-CGGUG-GCGCG-CGGu--UUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 31768 | 0.66 | 0.867314 |
Target: 5'- gCCGGAGacgcggcgcuggcguCCGCCGCcacguuccccGCGUCGGGCAc-- -3' miRNA: 3'- -GGCCUC---------------GGUGGCG----------CGCGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 65924 | 0.66 | 0.871058 |
Target: 5'- gCGGcGCCGgcgacggcaaacgUCGCGuCGCCAAACGUc- -3' miRNA: 3'- gGCCuCGGU-------------GGCGC-GCGGUUUGUAuu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 1018 | 0.66 | 0.8718 |
Target: 5'- aCCaGGccGCCGCCcgcgGCGCGCCGcAGCAg-- -3' miRNA: 3'- -GG-CCu-CGGUGG----CGCGCGGU-UUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 13248 | 0.66 | 0.8718 |
Target: 5'- gCGGGGCCACgCGgGCGguucgCAGGCAg-- -3' miRNA: 3'- gGCCUCGGUG-GCgCGCg----GUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 27999 | 0.66 | 0.8718 |
Target: 5'- gCGGAgGCgGCCGCG-GCCgAAGCGg-- -3' miRNA: 3'- gGCCU-CGgUGGCGCgCGG-UUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 38052 | 0.66 | 0.8718 |
Target: 5'- aCCGc-GCCGCCGCG-GCUAAGCu--- -3' miRNA: 3'- -GGCcuCGGUGGCGCgCGGUUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 41854 | 0.66 | 0.8718 |
Target: 5'- gCGcGGCCugCGCGCcGCC-GACAUc- -3' miRNA: 3'- gGCcUCGGugGCGCG-CGGuUUGUAuu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 64715 | 0.66 | 0.8718 |
Target: 5'- gCGGcaccGCCACCGaCGCGgCCGuGCAg-- -3' miRNA: 3'- gGCCu---CGGUGGC-GCGC-GGUuUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 65748 | 0.66 | 0.8718 |
Target: 5'- gCCGGgcccgcaaaGGCCGCCGgcaGCGCCAccgccGCAa-- -3' miRNA: 3'- -GGCC---------UCGGUGGCg--CGCGGUu----UGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 100331 | 0.66 | 0.8718 |
Target: 5'- cCCGGucGGCCugC-CGCGCCAGc----- -3' miRNA: 3'- -GGCC--UCGGugGcGCGCGGUUuguauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 122268 | 0.66 | 0.8718 |
Target: 5'- uCCGGGuCCACCGUGCuCC--ACGUGGu -3' miRNA: 3'- -GGCCUcGGUGGCGCGcGGuuUGUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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