miRNA display CGI


Results 41 - 60 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 86670 0.75 0.370117
Target:  5'- cUCGGAGCuCGCCGCGCGCUuuuGCc--- -3'
miRNA:   3'- -GGCCUCG-GUGGCGCGCGGuu-UGuauu -5'
6424 3' -56.3 NC_001847.1 + 21763 0.75 0.370117
Target:  5'- -gGGGGCCGCCG-GCGCCGGGCc--- -3'
miRNA:   3'- ggCCUCGGUGGCgCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 34317 0.75 0.370117
Target:  5'- gCCGGAGCCGCC-CGgGCCGAGg---- -3'
miRNA:   3'- -GGCCUCGGUGGcGCgCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 111648 0.75 0.378372
Target:  5'- uCUGGGuGCCACCuguagcgacGCGCGCCGAGCGc-- -3'
miRNA:   3'- -GGCCU-CGGUGG---------CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 95300 0.75 0.39525
Target:  5'- aCCGGcGGCUGgCGCGCGCCAcGCAg-- -3'
miRNA:   3'- -GGCC-UCGGUgGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 83134 0.75 0.39525
Target:  5'- cUCGGcGGCCGCCGCGgCGUCGGGCGc-- -3'
miRNA:   3'- -GGCC-UCGGUGGCGC-GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 75932 0.75 0.39525
Target:  5'- gUGGcGCCGCCGUGCGCCGccacacgcGGCGUGu -3'
miRNA:   3'- gGCCuCGGUGGCGCGCGGU--------UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 29032 0.74 0.403869
Target:  5'- cCCaGAGCCG-CGCGCGCCGgcaGACGUGc -3'
miRNA:   3'- -GGcCUCGGUgGCGCGCGGU---UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 45505 0.74 0.412607
Target:  5'- cCCGGGGCgggCGCCGC-CGCCGGGCGg-- -3'
miRNA:   3'- -GGCCUCG---GUGGCGcGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 70294 0.74 0.412607
Target:  5'- gCGGGGUCGCgGCGCGCCGcGCu--- -3'
miRNA:   3'- gGCCUCGGUGgCGCGCGGUuUGuauu -5'
6424 3' -56.3 NC_001847.1 + 3361 0.74 0.412607
Target:  5'- gCCGGccGCCGcaauCCGCGCGCCGAGCc--- -3'
miRNA:   3'- -GGCCu-CGGU----GGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 74399 0.74 0.42146
Target:  5'- aCCGcGcGGCCGCCGCGCGCgCGcgggccgccGACGUAAu -3'
miRNA:   3'- -GGC-C-UCGGUGGCGCGCG-GU---------UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 33004 0.74 0.430426
Target:  5'- gCCGGAGCgGCCgggggGCGCGCgGGGCGa-- -3'
miRNA:   3'- -GGCCUCGgUGG-----CGCGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 117272 0.74 0.438591
Target:  5'- gCGGGGCCGCCGUuuuggggcgccccGCGCCcGACGa-- -3'
miRNA:   3'- gGCCUCGGUGGCG-------------CGCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 133860 0.74 0.439504
Target:  5'- gCGGccAGCCACCGCGCcGCCAAcCGc-- -3'
miRNA:   3'- gGCC--UCGGUGGCGCG-CGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 4229 0.74 0.439504
Target:  5'- gCGGuGCCGgCGCGCGCCGGcACGa-- -3'
miRNA:   3'- gGCCuCGGUgGCGCGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 31047 0.74 0.439504
Target:  5'- gCGGccAGCCACCGCGCcGCCAAcCGc-- -3'
miRNA:   3'- gGCC--UCGGUGGCGCG-CGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 134288 0.74 0.439504
Target:  5'- aCCGGGuCCAuCUGCGCGUCAAGCAc-- -3'
miRNA:   3'- -GGCCUcGGU-GGCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 86988 0.74 0.439504
Target:  5'- gCCGG-GCCGgCGCGCGCCGgcccGGCGg-- -3'
miRNA:   3'- -GGCCuCGGUgGCGCGCGGU----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 81094 0.74 0.439504
Target:  5'- gCGGcGGCCucGCCGCGCGCCGacgagGACAUc- -3'
miRNA:   3'- gGCC-UCGG--UGGCGCGCGGU-----UUGUAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.