miRNA display CGI


Results 21 - 40 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 16371 0.78 0.267157
Target:  5'- gCCGGuGCCgcucacACCGCGCGCCAcaaccgcGACGUGu -3'
miRNA:   3'- -GGCCuCGG------UGGCGCGCGGU-------UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 27710 0.77 0.280894
Target:  5'- gCCGGcgGGCCGCC-CGCGCCGAGCu--- -3'
miRNA:   3'- -GGCC--UCGGUGGcGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 130523 0.77 0.280894
Target:  5'- gCCGGcgGGCCGCC-CGCGCCGAGCu--- -3'
miRNA:   3'- -GGCC--UCGGUGGcGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 63112 0.77 0.287631
Target:  5'- cCCGGGGCCGCCGCcGCGCaCGggUcgGu -3'
miRNA:   3'- -GGCCUCGGUGGCG-CGCG-GUuuGuaUu -5'
6424 3' -56.3 NC_001847.1 + 120539 0.77 0.294494
Target:  5'- --cGAGCCgaugACCGCGCGCCAGACGg-- -3'
miRNA:   3'- ggcCUCGG----UGGCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 52685 0.77 0.301483
Target:  5'- gCCGGGGCCgggcccGCCGCGCcuggaGCCAAGCGc-- -3'
miRNA:   3'- -GGCCUCGG------UGGCGCG-----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1864 0.77 0.3086
Target:  5'- gCCGGAGCgCACCGCGCgGCuUAGACGc-- -3'
miRNA:   3'- -GGCCUCG-GUGGCGCG-CG-GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 100872 0.76 0.315845
Target:  5'- gCGGcgcccAGCCGCCGCGCGCCGGucuGCGc-- -3'
miRNA:   3'- gGCC-----UCGGUGGCGCGCGGUU---UGUauu -5'
6424 3' -56.3 NC_001847.1 + 74111 0.76 0.323217
Target:  5'- cCCGGGGCgGCCGCGC-CCGGGgAUGu -3'
miRNA:   3'- -GGCCUCGgUGGCGCGcGGUUUgUAUu -5'
6424 3' -56.3 NC_001847.1 + 88021 0.76 0.330717
Target:  5'- cCCGG-GCCACgCGCGCGUuaagaaccugcgCAAACAUGAa -3'
miRNA:   3'- -GGCCuCGGUG-GCGCGCG------------GUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 101071 0.76 0.330717
Target:  5'- cCCGGGGCCGCCGCGgggGCCGggUcgGc -3'
miRNA:   3'- -GGCCUCGGUGGCGCg--CGGUuuGuaUu -5'
6424 3' -56.3 NC_001847.1 + 28101 0.76 0.338344
Target:  5'- cCCGGGGCCGCgCGCGacacCGCCGAuuuCAUGg -3'
miRNA:   3'- -GGCCUCGGUG-GCGC----GCGGUUu--GUAUu -5'
6424 3' -56.3 NC_001847.1 + 121754 0.76 0.338344
Target:  5'- cCCGGGcCCGCgGCGCGCCcGGACGUGc -3'
miRNA:   3'- -GGCCUcGGUGgCGCGCGG-UUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 38107 0.76 0.338344
Target:  5'- cCCGGAcGCCGCUGCccggcggguGCGCCGGGCAc-- -3'
miRNA:   3'- -GGCCU-CGGUGGCG---------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 57412 0.76 0.346098
Target:  5'- uCCGGgcgGGCCucGCaCGCGCGCCAAGCGc-- -3'
miRNA:   3'- -GGCC---UCGG--UG-GCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 54179 0.76 0.346098
Target:  5'- cCCGGAGCacuuugACCGCGCGCUcgcGGACAa-- -3'
miRNA:   3'- -GGCCUCGg-----UGGCGCGCGG---UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 33518 0.75 0.361985
Target:  5'- gCGGGcGCCGCCGCggagGCGCCGGGCGc-- -3'
miRNA:   3'- gGCCU-CGGUGGCG----CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 58845 0.75 0.366849
Target:  5'- aCGGuGCCcgcggcgcugcguCCGCGCGCCAGGCAg-- -3'
miRNA:   3'- gGCCuCGGu------------GGCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 21763 0.75 0.370117
Target:  5'- -gGGGGCCGCCG-GCGCCGGGCc--- -3'
miRNA:   3'- ggCCUCGGUGGCgCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 34317 0.75 0.370117
Target:  5'- gCCGGAGCCGCC-CGgGCCGAGg---- -3'
miRNA:   3'- -GGCCUCGGUGGcGCgCGGUUUguauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.