miRNA display CGI


Results 21 - 40 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 2997 0.73 0.505888
Target:  5'- gCUGGAGCCgcgcgcgcuccACCGCgucgcgggccGCGCCGAGCAg-- -3'
miRNA:   3'- -GGCCUCGG-----------UGGCG----------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 3065 0.7 0.658797
Target:  5'- uCCGGGugcGCCGCCaGCGCGUCcGGCGc-- -3'
miRNA:   3'- -GGCCU---CGGUGG-CGCGCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 3220 0.67 0.806029
Target:  5'- gCGcAGCCGCuCGCGCGCCGcccGCGc-- -3'
miRNA:   3'- gGCcUCGGUG-GCGCGCGGUu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 3361 0.74 0.412607
Target:  5'- gCCGGccGCCGcaauCCGCGCGCCGAGCc--- -3'
miRNA:   3'- -GGCCu-CGGU----GGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 3457 0.67 0.829586
Target:  5'- gCGGAagucgacagcaagcGCgCGCCgGCGCGCCGAgagcucgcACAUGAg -3'
miRNA:   3'- gGCCU--------------CG-GUGG-CGCGCGGUU--------UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 3685 0.71 0.596755
Target:  5'- gCCGcGAGCCugCGCGCaCCAcAgGUAGg -3'
miRNA:   3'- -GGC-CUCGGugGCGCGcGGUuUgUAUU- -5'
6424 3' -56.3 NC_001847.1 + 3707 0.68 0.787812
Target:  5'- gCCGcGGGCC-CCGCG-GCCGccGCGUAGc -3'
miRNA:   3'- -GGC-CUCGGuGGCGCgCGGUu-UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 3983 0.67 0.823601
Target:  5'- gCCGuGAGCaCGCCaGCGCgGCCAaguuAACAg-- -3'
miRNA:   3'- -GGC-CUCG-GUGG-CGCG-CGGU----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 3990 0.66 0.879101
Target:  5'- gCCGGgcgcgcGGCC-CCGCgggGCGCCGGGCc--- -3'
miRNA:   3'- -GGCC------UCGGuGGCG---CGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 4171 0.66 0.879101
Target:  5'- gCGG-GCCuuguuuuggGCCGCGCGCCcGugGg-- -3'
miRNA:   3'- gGCCuCGG---------UGGCGCGCGGuUugUauu -5'
6424 3' -56.3 NC_001847.1 + 4229 0.74 0.439504
Target:  5'- gCGGuGCCGgCGCGCGCCGGcACGa-- -3'
miRNA:   3'- gGCCuCGGUgGCGCGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 4297 0.66 0.8718
Target:  5'- gCCGGcGCCuugguACuCGCGCGCCGccuGCGg-- -3'
miRNA:   3'- -GGCCuCGG-----UG-GCGCGCGGUu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 4399 0.67 0.806029
Target:  5'- aCGGucGCCGCCGuCGaCGCCGAcgGCGg-- -3'
miRNA:   3'- gGCCu-CGGUGGC-GC-GCGGUU--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 4652 0.66 0.867314
Target:  5'- -aGGAGCCACCGCccgacguugcuugcgGCGUCuGGCu--- -3'
miRNA:   3'- ggCCUCGGUGGCG---------------CGCGGuUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 5397 0.68 0.749734
Target:  5'- gCCGGcGGCacagGCCGCGCGCuCAGugAg-- -3'
miRNA:   3'- -GGCC-UCGg---UGGCGCGCG-GUUugUauu -5'
6424 3' -56.3 NC_001847.1 + 5623 0.66 0.847798
Target:  5'- gUGGGcGCCGCggucccgCGCGCGCCAAAgAg-- -3'
miRNA:   3'- gGCCU-CGGUG-------GCGCGCGGUUUgUauu -5'
6424 3' -56.3 NC_001847.1 + 6347 0.66 0.848603
Target:  5'- cCCGGcGGCaACCGCGC-CgCGGGCGUAGc -3'
miRNA:   3'- -GGCC-UCGgUGGCGCGcG-GUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 8634 0.67 0.823601
Target:  5'- -gGGAGCgGCCGCugcggacucggGCGcCCAGACGa-- -3'
miRNA:   3'- ggCCUCGgUGGCG-----------CGC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 8985 0.68 0.769022
Target:  5'- gCGGuuguGGCCGCCGCGCuguuuGCCAu-CGUGc -3'
miRNA:   3'- gGCC----UCGGUGGCGCG-----CGGUuuGUAUu -5'
6424 3' -56.3 NC_001847.1 + 9107 0.67 0.835481
Target:  5'- cUCGGAGCCACCGCaG-GCCcugguuguuuuuuACGUGg -3'
miRNA:   3'- -GGCCUCGGUGGCG-CgCGGuu-----------UGUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.