miRNA display CGI


Results 21 - 40 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 132856 0.67 0.823601
Target:  5'- cCCGGcGGCC-CCGC-CGCCGAcgGCGg-- -3'
miRNA:   3'- -GGCC-UCGGuGGCGcGCGGUU--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 132813 0.7 0.638114
Target:  5'- gCgGGAGCCGCCGCugccCGCCc-GCGUGc -3'
miRNA:   3'- -GgCCUCGGUGGCGc---GCGGuuUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 132770 0.71 0.607074
Target:  5'- gCCGGcgaaaAGCCGCCGC-CGCCGAcGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGUGGCGcGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 132389 0.74 0.44869
Target:  5'- gCCGGcGCCggcGCCGcCGCGCCGGGCcgGGg -3'
miRNA:   3'- -GGCCuCGG---UGGC-GCGCGGUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 132178 0.72 0.535642
Target:  5'- cCCGGcGgCGCUGCGCGCCGAGgCGg-- -3'
miRNA:   3'- -GGCCuCgGUGGCGCGCGGUUU-GUauu -5'
6424 3' -56.3 NC_001847.1 + 132144 0.66 0.8718
Target:  5'- gCGGcgcuGCUGCCGCGCagggugggGCCGgcgAACAUAAa -3'
miRNA:   3'- gGCCu---CGGUGGCGCG--------CGGU---UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 132103 0.68 0.759436
Target:  5'- cCUGcGGCUGCUGgGCGCgCAGACGUGAc -3'
miRNA:   3'- -GGCcUCGGUGGCgCGCG-GUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 132097 0.67 0.8149
Target:  5'- cCCGGAGCgCGugcuCCGgGCcGCCGAGCu--- -3'
miRNA:   3'- -GGCCUCG-GU----GGCgCG-CGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 132058 0.74 0.44869
Target:  5'- gCCGGccGCgGCCuGCGCGCCGGACGc-- -3'
miRNA:   3'- -GGCCu-CGgUGG-CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 131986 0.66 0.84046
Target:  5'- gCUGGAGgcggcCCGCCGCGCcGCCG-GCGc-- -3'
miRNA:   3'- -GGCCUC-----GGUGGCGCG-CGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 131838 0.68 0.759436
Target:  5'- gCGGcGCCcgcGCCGCGCucGCCGAGCu--- -3'
miRNA:   3'- gGCCuCGG---UGGCGCG--CGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 131448 0.68 0.759436
Target:  5'- gCGGGGCCcgcgGCCGUguucGUGCCGGAgAUGGg -3'
miRNA:   3'- gGCCUCGG----UGGCG----CGCGGUUUgUAUU- -5'
6424 3' -56.3 NC_001847.1 + 131416 0.71 0.617411
Target:  5'- uCCGcGAgGCgGCCGCGCGCUAcGCGg-- -3'
miRNA:   3'- -GGC-CU-CGgUGGCGCGCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 131331 0.66 0.86428
Target:  5'- cCCGGcAGCgCGCCGC-CGCCGcccggccGCGUGc -3'
miRNA:   3'- -GGCC-UCG-GUGGCGcGCGGUu------UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 131245 0.67 0.806029
Target:  5'- uCCGc-GCCACCGCGCGC--AACGg-- -3'
miRNA:   3'- -GGCcuCGGUGGCGCGCGguUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 131241 0.67 0.806029
Target:  5'- aCCGGcGCCcgcgcuggcuacGCCGCGgCGCCGcGCGa-- -3'
miRNA:   3'- -GGCCuCGG------------UGGCGC-GCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 131195 0.71 0.576204
Target:  5'- gCCGGAGacggcgccccccCCGCCGCGgCGCCAGcGCGg-- -3'
miRNA:   3'- -GGCCUC------------GGUGGCGC-GCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 131148 0.69 0.678365
Target:  5'- cCCGGcGCCccgcgggGCCGCGCGcCCGGGCc--- -3'
miRNA:   3'- -GGCCuCGG-------UGGCGCGC-GGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 130861 0.68 0.769022
Target:  5'- -aGGcGCCGgCGCGCGCCu--CGUGg -3'
miRNA:   3'- ggCCuCGGUgGCGCGCGGuuuGUAUu -5'
6424 3' -56.3 NC_001847.1 + 130812 0.66 0.8718
Target:  5'- gCGGAgGCgGCCGCG-GCCgAAGCGg-- -3'
miRNA:   3'- gGCCU-CGgUGGCGCgCGG-UUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.