miRNA display CGI


Results 1 - 20 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 135009 0.69 0.709964
Target:  5'- gCCGGGGCCcgaggcCCGCGgGCgGGGCcgGGg -3'
miRNA:   3'- -GGCCUCGGu-----GGCGCgCGgUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 134927 0.67 0.806029
Target:  5'- cCCGGgcucgGGCCcCCGgGCGCCGggGGCGg-- -3'
miRNA:   3'- -GGCC-----UCGGuGGCgCGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 134885 0.7 0.638114
Target:  5'- cCCGGgcucgGGCCcCUGgGCGCCGGGCGUc- -3'
miRNA:   3'- -GGCC-----UCGGuGGCgCGCGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 134758 0.67 0.823601
Target:  5'- gUCGGAGCgcgguccggcgCGCgGCGCGCgGGGCGg-- -3'
miRNA:   3'- -GGCCUCG-----------GUGgCGCGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 134581 0.66 0.867314
Target:  5'- gCCGGAGacgcggcgcuggcguCCGCCGCcacguuccccGCGUCGGGCAc-- -3'
miRNA:   3'- -GGCCUC---------------GGUGGCG----------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 134550 0.68 0.787812
Target:  5'- gCGGAGCgGCCGCGgaggGCCAGGa---- -3'
miRNA:   3'- gGCCUCGgUGGCGCg---CGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 134376 0.67 0.796997
Target:  5'- gCCGGcGCCGCCG-GCGgCGGGCcgGc -3'
miRNA:   3'- -GGCCuCGGUGGCgCGCgGUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 134288 0.74 0.439504
Target:  5'- aCCGGGuCCAuCUGCGCGUCAAGCAc-- -3'
miRNA:   3'- -GGCCUcGGU-GGCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 134275 0.7 0.658797
Target:  5'- gCGGGccGCCGCCGCGCGUgGAGg---- -3'
miRNA:   3'- gGCCU--CGGUGGCGCGCGgUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 134090 0.67 0.796997
Target:  5'- cCCGGcGCCGCCGCuuGCUcuggcGAGCAg-- -3'
miRNA:   3'- -GGCCuCGGUGGCGcgCGG-----UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 134046 0.68 0.758471
Target:  5'- gCGGcGCCgcccgcgGCCGCgGCGCCcGGCGUGGa -3'
miRNA:   3'- gGCCuCGG-------UGGCG-CGCGGuUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 134000 0.72 0.555816
Target:  5'- gCCGGAGCCGCgCGCcgagGCGCCGc------ -3'
miRNA:   3'- -GGCCUCGGUG-GCG----CGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 133981 0.67 0.823601
Target:  5'- gCCGGGGCUgggaGCgCGCGCGgCAucGGCAg-- -3'
miRNA:   3'- -GGCCUCGG----UG-GCGCGCgGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 133860 0.74 0.439504
Target:  5'- gCGGccAGCCACCGCGCcGCCAAcCGc-- -3'
miRNA:   3'- gGCC--UCGGUGGCGCG-CGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 133743 0.66 0.848603
Target:  5'- cCCGu-GCCGCCGCGCGaguaCCGGcagcGCGUGc -3'
miRNA:   3'- -GGCcuCGGUGGCGCGC----GGUU----UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 133614 0.69 0.709964
Target:  5'- cCCGGGcGCCuuCgCGCGCGCCGAGg---- -3'
miRNA:   3'- -GGCCU-CGGu-G-GCGCGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 133309 0.73 0.476864
Target:  5'- gCCGGGcGCUggACgGgCGCGCCGGACGUGAg -3'
miRNA:   3'- -GGCCU-CGG--UGgC-GCGCGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 133211 0.66 0.848603
Target:  5'- gCCGGcGGCCcgagugGCCGcCGCGCCGcGGCGg-- -3'
miRNA:   3'- -GGCC-UCGG------UGGC-GCGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 133207 0.72 0.545699
Target:  5'- -aGGAGCUcugcGCCGCGCGCCGGc----- -3'
miRNA:   3'- ggCCUCGG----UGGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 133048 0.66 0.856545
Target:  5'- gCGGcccGCCGCCGCGCggGCCccGCGg-- -3'
miRNA:   3'- gGCCu--CGGUGGCGCG--CGGuuUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.