miRNA display CGI


Results 1 - 20 of 611 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 29384 0.84 0.109881
Target:  5'- gCCGGAGCUGCCGCGCGCgAGGCc--- -3'
miRNA:   3'- -GGCCUCGGUGGCGCGCGgUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 54179 0.76 0.346098
Target:  5'- cCCGGAGCacuuugACCGCGCGCUcgcGGACAa-- -3'
miRNA:   3'- -GGCCUCGg-----UGGCGCGCGG---UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 124576 0.75 0.370117
Target:  5'- -gGGGGCCGCCG-GCGCCGGGCc--- -3'
miRNA:   3'- ggCCUCGGUGGCgCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 99511 0.66 0.881958
Target:  5'- cCUGGAGUuugcgccgagccccgCGCCGCGCGCUuu-CGUu- -3'
miRNA:   3'- -GGCCUCG---------------GUGGCGCGCGGuuuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 103309 0.8 0.189574
Target:  5'- gCGGGGCgGCCGCGCGCCAAc----- -3'
miRNA:   3'- gGCCUCGgUGGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 35505 0.79 0.220312
Target:  5'- gCGGAgGCCACggCGCGCGCCGAGCGc-- -3'
miRNA:   3'- gGCCU-CGGUG--GCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 103707 0.78 0.2552
Target:  5'- gCCGGGGCCGCCGCGgcCGCCGGcCGc-- -3'
miRNA:   3'- -GGCCUCGGUGGCGC--GCGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 81121 0.78 0.261438
Target:  5'- uCCaGAGCgCGCCGCGCGUCGGACcgGAc -3'
miRNA:   3'- -GGcCUCG-GUGGCGCGCGGUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 52685 0.77 0.301483
Target:  5'- gCCGGGGCCgggcccGCCGCGCcuggaGCCAAGCGc-- -3'
miRNA:   3'- -GGCCUCGG------UGGCGCG-----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 121754 0.76 0.338344
Target:  5'- cCCGGGcCCGCgGCGCGCCcGGACGUGc -3'
miRNA:   3'- -GGCCUcGGUGgCGCGCGG-UUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 88021 0.76 0.330717
Target:  5'- cCCGG-GCCACgCGCGCGUuaagaaccugcgCAAACAUGAa -3'
miRNA:   3'- -GGCCuCGGUG-GCGCGCG------------GUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 130523 0.77 0.280894
Target:  5'- gCCGGcgGGCCGCC-CGCGCCGAGCu--- -3'
miRNA:   3'- -GGCC--UCGGUGGcGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 103179 0.84 0.112833
Target:  5'- cCCGGGGCCcgccccgcgcGCCGCGCGCCGGACc--- -3'
miRNA:   3'- -GGCCUCGG----------UGGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 101071 0.76 0.330717
Target:  5'- cCCGGGGCCGCCGCGgggGCCGggUcgGc -3'
miRNA:   3'- -GGCCUCGGUGGCGCg--CGGUuuGuaUu -5'
6424 3' -56.3 NC_001847.1 + 30612 0.81 0.171233
Target:  5'- cCCGGGGCCGCCGCgcaGCGCCGcaAACGc-- -3'
miRNA:   3'- -GGCCUCGGUGGCG---CGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 16371 0.78 0.267157
Target:  5'- gCCGGuGCCgcucacACCGCGCGCCAcaaccgcGACGUGu -3'
miRNA:   3'- -GGCCuCGG------UGGCGCGCGGU-------UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 28101 0.76 0.338344
Target:  5'- cCCGGGGCCGCgCGCGacacCGCCGAuuuCAUGg -3'
miRNA:   3'- -GGCCUCGGUG-GCGC----GCGGUUu--GUAUu -5'
6424 3' -56.3 NC_001847.1 + 33518 0.75 0.361985
Target:  5'- gCGGGcGCCGCCGCggagGCGCCGGGCGc-- -3'
miRNA:   3'- gGCCU-CGGUGGCG----CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 51429 0.81 0.175664
Target:  5'- aCGGAGCCGcCCGCGCGC--GACAUGGa -3'
miRNA:   3'- gGCCUCGGU-GGCGCGCGguUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 68470 0.79 0.231466
Target:  5'- gCCGGGGCCccGCCGCGCgggcgcaagcgcGCCAGGCAg-- -3'
miRNA:   3'- -GGCCUCGG--UGGCGCG------------CGGUUUGUauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.