Results 21 - 40 of 611 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 75932 | 0.75 | 0.39525 |
Target: 5'- gUGGcGCCGCCGUGCGCCGccacacgcGGCGUGu -3' miRNA: 3'- gGCCuCGGUGGCGCGCGGU--------UUGUAUu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 124576 | 0.75 | 0.370117 |
Target: 5'- -gGGGGCCGCCG-GCGCCGGGCc--- -3' miRNA: 3'- ggCCUCGGUGGCgCGCGGUUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 130523 | 0.77 | 0.280894 |
Target: 5'- gCCGGcgGGCCGCC-CGCGCCGAGCu--- -3' miRNA: 3'- -GGCC--UCGGUGGcGCGCGGUUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 51429 | 0.81 | 0.175664 |
Target: 5'- aCGGAGCCGcCCGCGCGC--GACAUGGa -3' miRNA: 3'- gGCCUCGGU-GGCGCGCGguUUGUAUU- -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 34390 | 0.73 | 0.467373 |
Target: 5'- aCGGcGGCCGCCGcCGCGgCAGACGc-- -3' miRNA: 3'- gGCC-UCGGUGGC-GCGCgGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 45505 | 0.74 | 0.412607 |
Target: 5'- cCCGGGGCgggCGCCGC-CGCCGGGCGg-- -3' miRNA: 3'- -GGCCUCG---GUGGCGcGCGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 54179 | 0.76 | 0.346098 |
Target: 5'- cCCGGAGCacuuugACCGCGCGCUcgcGGACAa-- -3' miRNA: 3'- -GGCCUCGg-----UGGCGCGCGG---UUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 30612 | 0.81 | 0.171233 |
Target: 5'- cCCGGGGCCGCCGCgcaGCGCCGcaAACGc-- -3' miRNA: 3'- -GGCCUCGGUGGCG---CGCGGU--UUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 3361 | 0.74 | 0.412607 |
Target: 5'- gCCGGccGCCGcaauCCGCGCGCCGAGCc--- -3' miRNA: 3'- -GGCCu-CGGU----GGCGCGCGGUUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 103179 | 0.84 | 0.112833 |
Target: 5'- cCCGGGGCCcgccccgcgcGCCGCGCGCCGGACc--- -3' miRNA: 3'- -GGCCUCGG----------UGGCGCGCGGUUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 33518 | 0.75 | 0.361985 |
Target: 5'- gCGGGcGCCGCCGCggagGCGCCGGGCGc-- -3' miRNA: 3'- gGCCU-CGGUGGCG----CGCGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 95300 | 0.75 | 0.39525 |
Target: 5'- aCCGGcGGCUGgCGCGCGCCAcGCAg-- -3' miRNA: 3'- -GGCC-UCGGUgGCGCGCGGUuUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 101071 | 0.76 | 0.330717 |
Target: 5'- cCCGGGGCCGCCGCGgggGCCGggUcgGc -3' miRNA: 3'- -GGCCUCGGUGGCGCg--CGGUuuGuaUu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 52685 | 0.77 | 0.301483 |
Target: 5'- gCCGGGGCCgggcccGCCGCGCcuggaGCCAAGCGc-- -3' miRNA: 3'- -GGCCUCGG------UGGCGCG-----CGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 103707 | 0.78 | 0.2552 |
Target: 5'- gCCGGGGCCGCCGCGgcCGCCGGcCGc-- -3' miRNA: 3'- -GGCCUCGGUGGCGC--GCGGUUuGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 103309 | 0.8 | 0.189574 |
Target: 5'- gCGGGGCgGCCGCGCGCCAAc----- -3' miRNA: 3'- gGCCUCGgUGGCGCGCGGUUuguauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 72225 | 0.73 | 0.48645 |
Target: 5'- -aGGAGCCGcCCGCGgGCCccGAGCAc-- -3' miRNA: 3'- ggCCUCGGU-GGCGCgCGG--UUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 43454 | 0.73 | 0.467373 |
Target: 5'- cCCGGGGCgACgGCGCggucGCCGAGCGc-- -3' miRNA: 3'- -GGCCUCGgUGgCGCG----CGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 4229 | 0.74 | 0.439504 |
Target: 5'- gCGGuGCCGgCGCGCGCCGGcACGa-- -3' miRNA: 3'- gGCCuCGGUgGCGCGCGGUU-UGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 74399 | 0.74 | 0.42146 |
Target: 5'- aCCGcGcGGCCGCCGCGCGCgCGcgggccgccGACGUAAu -3' miRNA: 3'- -GGC-C-UCGGUGGCGCGCG-GU---------UUGUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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